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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39771447	C-T	HOMO	INTERGENIC
SBS	Chr1	8516017	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g15190
SBS	Chr10	12740125	C-T	HET	INTERGENIC
SBS	Chr10	15131612	A-G	HET	INTERGENIC
SBS	Chr10	2331198	A-T	HOMO	INTERGENIC
SBS	Chr11	3230037	C-T	HET	INTERGENIC
SBS	Chr2	14918929	C-T	HET	INTERGENIC
SBS	Chr2	27754604	C-T	HET	INTERGENIC
SBS	Chr3	23123639	G-A	HOMO	INTERGENIC
SBS	Chr3	28043010	G-A	HET	INTERGENIC
SBS	Chr3	31271858	G-C	HET	INTERGENIC
SBS	Chr3	9649263	T-A	HET	SYNONYMOUS_CODING
SBS	Chr5	29922948	G-A	HET	INTERGENIC
SBS	Chr5	831402	C-A	HOMO	INTERGENIC
SBS	Chr5	831403	G-T	HOMO	INTERGENIC
SBS	Chr5	874112	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g02520
SBS	Chr5	8850798	T-A	HOMO	INTERGENIC
SBS	Chr6	19946846	G-T	HET	INTERGENIC
SBS	Chr6	23825629	G-C	HET	INTRON
SBS	Chr6	29881940	T-G	HET	INTRON
SBS	Chr6	30294196	T-C	HET	INTERGENIC
SBS	Chr7	2375067	C-T	HOMO	INTERGENIC
SBS	Chr7	26088604	C-A	HOMO	INTERGENIC
SBS	Chr7	26545715	A-T	HOMO	INTERGENIC
SBS	Chr8	19662077	G-A	HOMO	INTERGENIC
SBS	Chr8	21712900	A-G	HET	INTERGENIC
SBS	Chr8	7135122	C-T	HOMO	SYNONYMOUS_CODING

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2256767	2256786	19
Deletion	Chr3	4740606	4740607	1	LOC_Os03g09110
Deletion	Chr7	11063740	11063741	1
Deletion	Chr12	11275178	11275179	1
Deletion	Chr3	13639376	13639378	2
Deletion	Chr3	14843358	14843362	4
Deletion	Chr9	15474133	15474134	1
Deletion	Chr10	16677328	16677336	8	LOC_Os10g31810
Deletion	Chr10	17066412	17067787	1375	LOC_Os10g32570
Deletion	Chr10	18100909	18100915	6
Deletion	Chr9	19586329	19586334	5
Deletion	Chr6	26473366	26473377	11	LOC_Os06g43940
Deletion	Chr2	29603613	29603655	42

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	22223380	22223383	4
Insertion	Chr12	25556821	25556828	8
Insertion	Chr2	24120906	24120907	2
Insertion	Chr2	24179472	24179473	2
Insertion	Chr5	7814999	7815000	2
Insertion	Chr8	234871	234876	6
Insertion	Chr8	776974	776976	3
Insertion	Chr9	15131179	15131182	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6435708	6459680

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2744477	Chr1	19170028
Translocation	Chr12	11272986	Chr11	9861376	LOC_Os12g19381
Translocation	Chr3	16632910	Chr2	33429412
Translocation	Chr10	17066421	Chr7	8650187	LOC_Os10g32570
Translocation	Chr10	17067771	Chr7	8650186
Translocation	Chr12	20116853	Chr11	6439248
Translocation	Chr12	20116880	Chr11	6510125	LOC_Os11g11710
Translocation	Chr9	21005583	Chr6	30225341	2

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