Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14108368	A-T	HET	INTERGENIC
SBS	Chr1	14108369	C-T	HET	INTERGENIC
SBS	Chr1	19389009	G-A	HOMO	INTERGENIC
SBS	Chr11	11477660	G-A	HET	INTERGENIC
SBS	Chr11	17736481	C-A	HET	INTERGENIC
SBS	Chr11	21437792	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	22547792	A-G	HET	INTERGENIC
SBS	Chr11	23275365	G-A	HET	INTERGENIC
SBS	Chr11	23768054	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g39870
SBS	Chr11	3669565	C-T	HET	INTRON
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr12	16261393	C-G	HOMO	INTERGENIC
SBS	Chr12	22100679	G-A	HET	INTERGENIC
SBS	Chr12	874106	C-T	HET	INTERGENIC
SBS	Chr2	32764606	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr2	35900340	G-A	HOMO	INTERGENIC
SBS	Chr3	23072232	G-A	HET	INTERGENIC
SBS	Chr3	25680450	T-A	HET	INTERGENIC
SBS	Chr3	26511889	G-T	HET	INTERGENIC
SBS	Chr3	30933479	G-A	HET	INTERGENIC
SBS	Chr3	31008655	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g54084
SBS	Chr3	8166505	C-T	HET	UTR_3_PRIME
SBS	Chr5	17903200	G-A	HET	INTERGENIC
SBS	Chr5	24306956	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	10620240	C-A	HET	INTERGENIC
SBS	Chr6	12121321	C-T	HOMO	INTRON
SBS	Chr8	5856267	A-T	HOMO	INTERGENIC
SBS	Chr9	13898932	T-C	HOMO	INTERGENIC
SBS	Chr9	14756658	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	20775911	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g36080
SBS	Chr9	324318	G-A	HET	INTERGENIC
SBS	Chr9	3949170	C-A	HET	INTERGENIC
SBS	Chr9	5495450	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1938975	1938992	17
Deletion	Chr9	3747220	3748268	1048	LOC_Os09g07480
Deletion	Chr11	4167462	4167463	1
Deletion	Chr5	5483891	5483892	1
Deletion	Chr3	7778094	7778110	16	LOC_Os03g14280
Deletion	Chr11	9886001	9976000	90000	11
Deletion	Chr11	9986001	10228000	242000	26
Deletion	Chr11	10243853	11216783	972930	121
Deletion	Chr6	10403159	10403174	15
Deletion	Chr3	11686964	11686968	4	LOC_Os03g20660
Deletion	Chr4	12679891	12679892	1
Deletion	Chr9	12944519	12945040	521
Deletion	Chr9	13482639	13482647	8
Deletion	Chr3	14763969	14763970	1
Deletion	Chr9	18793169	18793170	1
Deletion	Chr1	19434008	19434009	1
Deletion	Chr12	22243499	22243501	2
Deletion	Chr5	22707407	22707420	13
Deletion	Chr6	23034634	23034635	1
Deletion	Chr5	23469251	23470589	1338
Deletion	Chr7	23897713	23897718	5
Deletion	Chr1	24490224	24490225	1
Deletion	Chr3	30117451	30117453	2
Deletion	Chr3	31225286	31225293	7
Deletion	Chr3	32076459	32076490	31
Deletion	Chr3	32882695	32882697	2	LOC_Os03g57690
Deletion	Chr3	33014030	33014038	8	LOC_Os03g57950
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960
Deletion	Chr1	36787753	36787760	7

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	30507248	30507249	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	31108298	31441908	LOC_Os03g55240

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7698801	Chr8	26615553	LOC_Os08g42120
Translocation	Chr6	26619420	Chr5	23470583
Translocation	Chr6	26619428	Chr5	23469261

Main menu