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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16138711	T-A	HET	INTRON
SBS	Chr1	27495810	G-T	HET	SYNONYMOUS_CODING
SBS	Chr10	18124939	C-T	HET	INTERGENIC
SBS	Chr10	3197149	G-A	HET	INTRON
SBS	Chr10	6964070	C-A	HOMO	INTERGENIC
SBS	Chr11	25579197	C-T	HOMO	INTERGENIC
SBS	Chr12	11332701	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19480
SBS	Chr2	14327473	T-C	HOMO	INTERGENIC
SBS	Chr2	22912790	C-T	HOMO	INTRON
SBS	Chr2	28372468	C-T	HET	INTERGENIC
SBS	Chr2	32956318	C-A	HET	INTERGENIC
SBS	Chr2	6727257	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g12810
SBS	Chr3	31327199	C-T	HET	INTERGENIC
SBS	Chr3	31327206	T-G	HET	INTERGENIC
SBS	Chr3	33375057	A-T	HET	STOP_GAINED	LOC_Os03g58600
SBS	Chr3	5867704	A-G	HET	INTRON
SBS	Chr3	767189	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g02260
SBS	Chr4	11711927	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20860
SBS	Chr4	13369579	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g23380
SBS	Chr4	14544461	C-G	HOMO	INTERGENIC
SBS	Chr5	22190800	T-A	HET	INTERGENIC
SBS	Chr5	27200736	T-C	HET	INTERGENIC
SBS	Chr5	3999337	G-A	HET	INTERGENIC
SBS	Chr5	4088225	A-G	HET	INTERGENIC
SBS	Chr6	19910565	C-T	HOMO	INTERGENIC
SBS	Chr6	9185774	A-G	HET	INTERGENIC
SBS	Chr7	8822829	T-A	HOMO	INTERGENIC
SBS	Chr8	1795707	G-A	HET	INTERGENIC
SBS	Chr9	11168901	A-G	HET	INTERGENIC
SBS	Chr9	17516420	C-A	HOMO	INTRON
SBS	Chr9	4233020	C-T	HOMO	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	427528	427529	1
Deletion	Chr2	1881952	1881953	1	LOC_Os02g04260
Deletion	Chr5	2126492	2126502	10
Deletion	Chr12	4803044	4803051	7
Deletion	Chr5	5618088	5618091	3
Deletion	Chr12	6109339	6109352	13	LOC_Os12g11330
Deletion	Chr12	6636565	6636566	1
Deletion	Chr11	9524195	9524210	15	LOC_Os11g17150
Deletion	Chr8	10177457	10177458	1
Deletion	Chr6	10198772	10198773	1	LOC_Os06g17570
Deletion	Chr9	12643950	12643953	3
Deletion	Chr12	14289911	14289913	2
Deletion	Chr1	15044169	15044170	1	LOC_Os01g27000
Deletion	Chr8	15970751	15970752	1
Deletion	Chr7	16971002	16971039	37
Deletion	Chr3	17263156	17263158	2	LOC_Os03g30260
Deletion	Chr12	17565404	17565414	10
Deletion	Chr10	19141357	19147682	6325	3
Deletion	Chr6	19910571	19910574	3
Deletion	Chr3	20047812	20047831	19
Deletion	Chr1	20155444	20155445	1
Deletion	Chr11	20772001	21177000	405000	58
Deletion	Chr8	20877890	20877903	13
Deletion	Chr12	21094169	21094182	13
Deletion	Chr3	22092643	22092644	1
Deletion	Chr8	23297357	23297358	1
Deletion	Chr6	23319307	23323795	4488	LOC_Os06g39300
Deletion	Chr1	25895283	25895286	3	LOC_Os01g45590
Deletion	Chr3	35032123	35032125	2
Deletion	Chr3	35134800	35134802	2	LOC_Os03g61990
Deletion	Chr3	36095415	36095430	15	LOC_Os03g63870
Deletion	Chr1	36596220	36596248	28
Deletion	Chr1	39265569	39265571	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	24620953	24620970	18
Insertion	Chr2	35559918	35559920	3
Insertion	Chr4	18177773	18177773	1

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1266437	Chr2	33237978	2
Translocation	Chr11	12913942	Chr6	23319388
Translocation	Chr11	12913947	Chr6	23323813	LOC_Os06g39300
Translocation	Chr10	19141361	Chr5	6062585
Translocation	Chr10	19147676	Chr5	6062548	LOC_Os10g35800
Translocation	Chr11	20037514	Chr6	1427715	LOC_Os11g34220
Translocation	Chr11	20039628	Chr6	1427708

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