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Mutant Information

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10485127	T-C	HET	INTERGENIC
SBS	Chr2	4811981	G-A	HET	INTRON
SBS	Chr2	5004523	C-A	HET	INTERGENIC
SBS	Chr2	31384295	G-A	HOMO	INTERGENIC
SBS	Chr3	10663136	C-T	HOMO	INTRON
SBS	Chr3	15497178	C-T	HOMO	INTERGENIC
SBS	Chr3	25561829	G-A	HOMO	INTERGENIC
SBS	Chr3	25561833	T-A	HOMO	INTERGENIC
SBS	Chr4	15344004	G-C	HET	INTRON
SBS	Chr5	26763766	A-G	HOMO	INTRON
SBS	Chr7	18735047	C-T	HOMO	INTERGENIC
SBS	Chr9	277520	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	13613394	C-T	HET	INTRON
SBS	Chr11	5533857	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g10200
SBS	Chr11	20253424	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34600
SBS	Chr12	14151871	T-A	HET	SYNONYMOUS_CODING

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2472666	2472684	18
Deletion	Chr5	2937081	2937091	10	LOC_Os05g05860
Deletion	Chr6	3415976	3415979	3
Deletion	Chr6	4622583	4622594	11
Deletion	Chr7	7708120	7708144	24
Deletion	Chr1	8119077	8119174	97	LOC_Os01g14490
Deletion	Chr1	11040690	11040699	9
Deletion	Chr9	12032290	12032291	1
Deletion	Chr5	12878698	12878700	2	LOC_Os05g22680
Deletion	Chr10	13926935	13926936	1
Deletion	Chr10	14628001	14692000	64000	7
Deletion	Chr1	15447782	15447787	5
Deletion	Chr4	17062930	17062933	3
Deletion	Chr5	18486516	18486530	14
Deletion	Chr12	18887879	18887887	8
Deletion	Chr7	27070743	27070750	7
Deletion	Chr3	27187587	27187596	9
Deletion	Chr8	27851770	27851777	7	LOC_Os08g44240
Deletion	Chr2	29371185	29371195	10
Deletion	Chr3	35543724	35543726	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2713653	2713654	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	33586557	39114688	LOC_Os01g67364

No Translocation

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