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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11051639	T-A	Homo	INTERGENIC
SBS	Chr1	27820331	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g48520
SBS	Chr3	27753694	C-G	HET	INTRON
SBS	Chr4	2359814	T-A	HET	SYNONYMOUS_CODING
SBS	Chr4	3903830	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	8096732	C-T	HET	INTERGENIC
SBS	Chr5	1504588	C-T	HET	INTRON
SBS	Chr5	7967286	T-A	HET	INTERGENIC
SBS	Chr5	9020208	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	14331291	G-A	HET	SPLICE_SITE_ACCEPTOR	LOC_Os05g24720
SBS	Chr5	18620055	T-C	HET	INTERGENIC
SBS	Chr6	20546556	G-A	HET	INTERGENIC
SBS	Chr8	6855886	G-T	Homo	INTERGENIC
SBS	Chr9	5175689	G-T	HET	INTERGENIC
SBS	Chr9	6598821	A-T	HET	INTERGENIC
SBS	Chr10	22549187	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g41910
SBS	Chr11	3286240	T-C	Homo	INTERGENIC
SBS	Chr11	11933705	C-A	Homo	INTERGENIC
SBS	Chr11	21757895	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g36880
SBS	Chr11	25262495	C-T	Homo	UTR_3_PRIME
SBS	Chr12	22153694	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36140

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1	326000	326000	55
Deletion	Chr3	834592	834593	1	LOC_Os03g02370
Deletion	Chr5	1006233	1006401	168	LOC_Os05g02790
Deletion	Chr4	2291610	2291612	2
Deletion	Chr7	2377045	2377055	10
Deletion	Chr1	4424012	4424013	1	LOC_Os01g08814
Deletion	Chr1	5310485	5310497	12
Deletion	Chr5	6054925	6054926	1
Deletion	Chr12	6665158	6665159	1
Deletion	Chr7	7172166	7172174	8
Deletion	Chr6	7852100	7852102	2
Deletion	Chr11	9412335	9412349	14
Deletion	Chr8	9415841	9415842	1
Deletion	Chr10	10619701	10619702	1
Deletion	Chr10	12390916	12390924	8	LOC_Os10g24190
Deletion	Chr5	12674702	12674713	11
Deletion	Chr8	12684533	12684535	2
Deletion	Chr4	16621131	16621148	17
Deletion	Chr7	18731664	18731668	4
Deletion	Chr4	19897892	19897904	12
Deletion	Chr7	20522001	20607000	85000	11
Deletion	Chr8	21902349	21902359	10
Deletion	Chr12	22943960	22943961	1
Deletion	Chr8	23387609	23387610	1	LOC_Os08g36980
Deletion	Chr5	25182125	25182128	3	LOC_Os05g43280
Deletion	Chr8	26847964	26847965	1
Deletion	Chr5	29869832	29878388	8556	LOC_Os05g52019
Deletion	Chr5	29869936	29878492	8556	LOC_Os05g52019
Deletion	Chr1	30168995	30168997	2
Deletion	Chr4	32281331	32281333	2	LOC_Os04g54190
Deletion	Chr1	33364374	33364375	1	LOC_Os01g57710

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	7914321	7914324	4
Insertion	Chr2	19232817	19232818	2
Insertion	Chr7	17891197	17891198	2
Insertion	Chr9	12783231	12783232	2	LOC_Os09g21180
Insertion	Chr5	2134647	2134647	1
Insertion	Chr1	30600695	30600695	1
Insertion	Chr1	31900123	31900124	2
Insertion	Chr2	25742392	25742445	54
Insertion	Chr2	27948853	27948854	2
Insertion	Chr2	35528224	35528225	2
Insertion	Chr3	15334548	15334548	1	LOC_Os03g26870
Insertion	Chr7	164857	164857	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12464702	12838635	2
Inversion	Chr1	34805216	35561274	LOC_Os01g60190

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	326214	Chr7	24579190	2
Translocation	Chr11	7092365	Chr2	14718011
Translocation	Chr11	7092600	Chr2	14718277
Translocation	Chr11	11204410	Chr6	8158770	2
Translocation	Chr11	11206473	Chr6	8158728	2

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