Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12102003	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	28805962	G-A	HET	INTERGENIC
SBS	Chr1	6995810	A-G	HET	INTERGENIC
SBS	Chr10	14762613	C-T	HET	INTERGENIC
SBS	Chr11	11713026	A-G	HET	INTERGENIC
SBS	Chr12	11648761	G-A	HOMO	INTRON
SBS	Chr12	14360592	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g25030
SBS	Chr12	16973688	C-T	HOMO	INTERGENIC
SBS	Chr2	22093768	A-G	HET	INTERGENIC
SBS	Chr2	24225047	G-T	HET	INTRON
SBS	Chr2	27042943	T-A	HET	INTERGENIC
SBS	Chr3	13299926	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23030
SBS	Chr3	18097093	C-T	HET	INTERGENIC
SBS	Chr3	30823012	A-T	HOMO	INTERGENIC
SBS	Chr4	17050793	G-T	HET	INTERGENIC
SBS	Chr4	2595913	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05200
SBS	Chr5	22818578	C-A	HOMO	INTERGENIC
SBS	Chr6	17487888	G-T	HOMO	INTRON
SBS	Chr6	8365562	C-G	HET	INTERGENIC
SBS	Chr7	14072518	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24750
SBS	Chr7	25866939	C-T	HOMO	INTERGENIC
SBS	Chr8	26226653	G-T	HET	INTERGENIC
SBS	Chr8	5177330	A-G	HET	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2157405	2157411	6
Deletion	Chr6	5623007	5623010	3
Deletion	Chr3	6926001	6984000	58000	9
Deletion	Chr3	10394978	10394987	9	LOC_Os03g18570
Deletion	Chr11	11110001	11436000	326000	53
Deletion	Chr11	11442001	11712000	270000	38
Deletion	Chr3	26855147	26855149	2
Deletion	Chr4	30198479	30198480	1	LOC_Os04g51009
Deletion	Chr3	30823450	30823452	2
Deletion	Chr1	33395902	33395910	8	LOC_Os01g57740

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	6700182	6700183	2
Insertion	Chr3	4046273	4046273	1
Insertion	Chr4	5066942	5066942	1
Insertion	Chr9	17452420	17452420	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6863766	6926143
Inversion	Chr4	34278651	34743719	2
Inversion	Chr4	34278666	34743730	2

No Translocation

Main menu