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Mutant Information

Mutant Name	FN1395-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1395-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	17434106	T-C	HET	UTR_3_PRIME
SBS	Chr10	5382120	G-A	HOMO	INTERGENIC
SBS	Chr12	23156969	C-T	HET	UTR_3_PRIME
SBS	Chr12	7226280	A-G	HET	INTERGENIC
SBS	Chr2	11196404	T-A	HET	INTERGENIC
SBS	Chr3	15185307	T-A	HET	INTERGENIC
SBS	Chr3	25659593	C-T	HET	INTERGENIC
SBS	Chr3	6456086	A-G	HET	INTERGENIC
SBS	Chr5	14535457	A-C	HOMO	INTRON
SBS	Chr5	16098622	T-A	HET	INTRON
SBS	Chr7	11900274	C-A	HET	INTERGENIC
SBS	Chr9	10366648	T-C	HET	INTRON
SBS	Chr9	16599946	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27300
SBS	Chr9	2384153	G-A	HET	INTERGENIC
SBS	Chr9	2384154	G-A	HET	INTERGENIC
SBS	Chr9	7478305	C-T	HET	INTRON

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	13650675	13650676	1
Deletion	Chr7	19643235	19643241	6
Deletion	Chr1	22825390	22825391	1
Deletion	Chr12	23411821	23411829	8
Deletion	Chr3	23530394	23530395	1
Deletion	Chr3	25643576	25643585	9
Deletion	Chr1	27285727	27285728	1
Deletion	Chr4	27394251	27394255	4
Deletion	Chr4	29292212	29292221	9	LOC_Os04g49130
Deletion	Chr6	30100321	30100329	8
Deletion	Chr1	31631639	31631641	2
Deletion	Chr1	33975816	33975817	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	29635299	29635299	1
Insertion	Chr4	13912052	13912054	3
Insertion	Chr7	4124573	4124574	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12853329	17273814	LOC_Os12g22780

No Translocation