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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	861459	C-T	HET	INTERGENIC
SBS	Chr1	9487499	C-T	HET	INTERGENIC
SBS	Chr1	41226515	A-T	Homo	INTRON
SBS	Chr1	42375783	T-A	Homo	INTERGENIC
SBS	Chr2	773648	C-T	HET	INTERGENIC
SBS	Chr2	775365	T-A	HET	INTERGENIC
SBS	Chr2	7524794	A-T	HET	INTERGENIC
SBS	Chr2	7575693	T-G	HET	INTERGENIC
SBS	Chr2	28585489	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g46860
SBS	Chr2	33777625	C-T	HET	UTR_5_PRIME
SBS	Chr3	15497178	C-T	Homo	INTERGENIC
SBS	Chr3	20024076	C-T	Homo	INTERGENIC
SBS	Chr3	25022718	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44460
SBS	Chr4	4809426	C-T	HET	INTERGENIC
SBS	Chr4	18740075	T-A	HET	INTERGENIC
SBS	Chr4	22635577	G-A	HET	INTERGENIC
SBS	Chr5	17567579	A-G	Homo	INTRON
SBS	Chr5	21470878	G-A	Homo	INTERGENIC
SBS	Chr6	1899399	G-A	HET	INTERGENIC
SBS	Chr6	2607124	T-A	HET	INTERGENIC
SBS	Chr7	3226839	A-T	HET	INTRON
SBS	Chr7	21512825	A-G	HET	INTERGENIC
SBS	Chr8	22811119	C-T	HET	INTRON
SBS	Chr9	6684193	C-T	HET	INTERGENIC
SBS	Chr9	11198184	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	8631097	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17180
SBS	Chr10	9149409	G-A	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	938856	938857	1	LOC_Os02g02590
Deletion	Chr4	1540939	1540957	18
Deletion	Chr5	2853252	2853253	1
Deletion	Chr11	4356217	4356219	2
Deletion	Chr2	4433816	4433821	5	LOC_Os02g08350
Deletion	Chr6	4608269	4608278	9
Deletion	Chr12	5011740	5011833	93
Deletion	Chr8	5093451	5093452	1
Deletion	Chr6	6919675	6919683	8
Deletion	Chr11	8610957	8610958	1
Deletion	Chr6	9658053	9658054	1
Deletion	Chr10	12453356	12453357	1	LOC_Os10g24310
Deletion	Chr1	14087096	14087097	1
Deletion	Chr9	15242109	15242112	3
Deletion	Chr8	15301500	15301501	1
Deletion	Chr10	15645626	15645631	5
Deletion	Chr10	15649225	15649229	4
Deletion	Chr5	15721767	15721769	2
Deletion	Chr2	16925612	16925613	1
Deletion	Chr9	17209479	17209481	2
Deletion	Chr4	18312356	18312357	1
Deletion	Chr1	19293225	19293234	9
Deletion	Chr4	20803850	20803857	7	LOC_Os04g34350
Deletion	Chr12	22058178	22058215	37
Deletion	Chr2	22309658	22309659	1
Deletion	Chr12	22345969	22345994	25
Deletion	Chr3	22715134	22715141	7
Deletion	Chr6	22814482	22814483	1
Deletion	Chr2	23828586	23828591	5
Deletion	Chr12	25869288	25869289	1
Deletion	Chr3	26077618	26077625	7
Deletion	Chr4	26327083	26327084	1	LOC_Os04g44480
Deletion	Chr5	29396820	29396827	7
Deletion	Chr3	34424963	34424964	1	LOC_Os03g60560

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	1072102	1072103	2
Insertion	Chr5	11182632	11182633	2
Insertion	Chr2	6505049	6505049	1
Insertion	Chr3	8036446	8036447	2
Insertion	Chr3	15656468	15656468	1
Insertion	Chr3	27952380	27952380	1
Insertion	Chr3	34750032	34750032	1
Insertion	Chr4	9469562	9469565	4
Insertion	Chr4	18350905	18350928	24
Insertion	Chr4	32332707	32332784	78
Insertion	Chr5	16582133	16582133	1
Insertion	Chr6	15444523	15444598	76
Insertion	Chr7	15417522	15417522	1
Insertion	Chr7	24240082	24240112	31
Insertion	Chr8	15238874	15238875	2
Insertion	Chr8	20647040	20647040	1
Insertion	Chr10	4723449	4723456	8
Insertion	Chr12	17312332	17312396	65

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1945295	3532793
Inversion	Chr7	3270038	3532778

No Translocation

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