Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN1439-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1439-S Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16596281 | G-T | HOMO | INTRON | |
| SBS | Chr1 | 21160566 | G-A | HET | INTRON | |
| SBS | Chr10 | 10931961 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 16679549 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 3450134 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g06640 |
| SBS | Chr11 | 26578427 | C-T | HET | INTRON | |
| SBS | Chr12 | 25651505 | C-A | HET | SPLICE_SITE_REGION | |
| SBS | Chr2 | 20602144 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 30103250 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 3099838 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g06180 |
| SBS | Chr4 | 16514517 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 2721075 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 25133209 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 21454739 | C-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 5275081 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 8586804 | G-C | HET | INTERGENIC | |
| SBS | Chr8 | 10662316 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 10793821 | A-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 1433231 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g03130 |
| SBS | Chr8 | 17397376 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g28500 |
| SBS | Chr8 | 17397377 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g28500 |
| SBS | Chr8 | 17447913 | C-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 17536151 | A-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 17536152 | A-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 17942737 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 1152494 | T-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 15848822 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 1954234 | A-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g03860 |
| SBS | Chr9 | 20868289 | T-G | HET | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2244492 | 2244496 | 4 | |
| Deletion | Chr10 | 4668419 | 4668426 | 7 | |
| Deletion | Chr2 | 5272603 | 5272607 | 4 | LOC_Os02g10110 |
| Deletion | Chr9 | 14150143 | 14150144 | 1 | |
| Deletion | Chr10 | 14687190 | 14687195 | 5 | |
| Deletion | Chr8 | 14766426 | 14766427 | 1 | |
| Deletion | Chr9 | 15576919 | 15576925 | 6 | |
| Deletion | Chr10 | 17640641 | 17640642 | 1 | |
| Deletion | Chr4 | 18965704 | 18983511 | 17807 | 3 |
| Deletion | Chr4 | 19360840 | 19364518 | 3678 | |
| Deletion | Chr10 | 19696798 | 19696801 | 3 | |
| Deletion | Chr4 | 20430384 | 20434865 | 4481 | |
| Deletion | Chr6 | 21184097 | 21184100 | 3 | |
| Deletion | Chr3 | 24814726 | 24814736 | 10 | |
| Deletion | Chr4 | 26501730 | 26501732 | 2 | |
| Deletion | Chr1 | 29168702 | 29168724 | 22 | |
| Deletion | Chr2 | 29638320 | 29638324 | 4 | |
| Deletion | Chr3 | 33175287 | 33175288 | 1 | |
| Deletion | Chr3 | 36391939 | 36391945 | 6 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 24553661 | 24698915 | |
| Inversion | Chr3 | 24671410 | 24698859 | |
| Inversion | Chr1 | 33534666 | 33534980 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 15915442 | Chr3 | 32469426 |