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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN1449-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1449-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18037728	G-T	HET	INTERGENIC
SBS	Chr1	18845021	C-T	HOMO	INTERGENIC
SBS	Chr1	29678802	G-A	HET	INTERGENIC
SBS	Chr11	12905599	C-T	HET	INTERGENIC
SBS	Chr11	1804805	G-T	HET	INTERGENIC
SBS	Chr12	9415473	C-T	HOMO	STOP_GAINED	LOC_Os12g16440
SBS	Chr2	4379571	C-A	HET	INTRON
SBS	Chr3	15469851	C-A	HET	INTRON
SBS	Chr3	18673589	C-T	HOMO	INTERGENIC
SBS	Chr3	29026996	C-T	HOMO	INTERGENIC
SBS	Chr3	30378163	C-T	HET	INTERGENIC
SBS	Chr3	33262800	G-T	HET	INTERGENIC
SBS	Chr3	7569248	C-T	HET	INTERGENIC
SBS	Chr4	34894207	T-C	HET	INTRON
SBS	Chr6	15625615	C-A	HET	INTERGENIC
SBS	Chr7	15246610	G-T	HOMO	INTERGENIC
SBS	Chr7	19220710	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	7537021	A-G	HET	INTERGENIC
SBS	Chr8	7412282	C-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	326930	326948	18	LOC_Os09g01430
Deletion	Chr9	4473300	4473304	4
Deletion	Chr11	7084400	7084419	19
Deletion	Chr1	8535253	8535256	3
Deletion	Chr8	12362656	12362672	16
Deletion	Chr11	14458138	14458147	9
Deletion	Chr3	15588241	15588250	9
Deletion	Chr5	16918095	16918101	6
Deletion	Chr9	18542162	18542168	6
Deletion	Chr9	20071815	20071816	1	LOC_Os09g33992
Deletion	Chr3	23466688	23466701	13
Deletion	Chr6	25413697	25413699	2
Deletion	Chr12	25719553	25719560	7	LOC_Os12g41530
Deletion	Chr2	26127121	26127125	4	LOC_Os02g43314
Deletion	Chr2	26169543	26169544	1
Deletion	Chr7	27801052	27801097	45
Deletion	Chr5	29118936	29118939	3
Deletion	Chr2	31483544	31483675	131

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10227563	10227564	2
Insertion	Chr4	23572572	23572572	1
Insertion	Chr4	29304624	29304624	1
Insertion	Chr6	27427501	27427503	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6166057	6402429
Inversion	Chr3	8674955	31997478	LOC_Os03g15730
Inversion	Chr11	9801150	10291366	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	6402391	Chr1	24484921	LOC_Os01g42990
Translocation	Chr3	31997483	Chr1	24470883