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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1356851	G-T	HOMO	STOP_GAINED	LOC_Os01g03370
SBS	Chr1	3183163	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g06730
SBS	Chr1	5041884	C-T	HOMO	INTERGENIC
SBS	Chr1	10764476	G-A	HET	INTERGENIC
SBS	Chr1	15416845	G-T	HET	INTERGENIC
SBS	Chr1	24292437	C-T	HOMO	INTERGENIC
SBS	Chr2	7181565	C-T	HET	INTERGENIC
SBS	Chr2	9544678	G-T	HET	SYNONYMOUS_CODING
SBS	Chr2	17648568	C-T	HOMO	INTERGENIC
SBS	Chr2	33241506	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	148872	A-G	HET	UTR_3_PRIME
SBS	Chr3	20966649	T-C	HET	INTERGENIC
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr4	2134561	C-T	HET	INTRON
SBS	Chr4	9212804	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16810
SBS	Chr4	9632953	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g17610
SBS	Chr4	24769337	G-C	HOMO	INTERGENIC
SBS	Chr5	2621550	A-T	HET	INTRON
SBS	Chr5	4246757	G-A	HET	UTR_5_PRIME
SBS	Chr5	4246759	G-A	HET	UTR_5_PRIME
SBS	Chr5	4797768	G-A	HET	INTERGENIC
SBS	Chr5	10363450	G-A	HET	INTRON
SBS	Chr5	12804950	G-A	HET	INTERGENIC
SBS	Chr6	5715669	T-A	HET	INTERGENIC
SBS	Chr6	11249377	C-A	HET	INTERGENIC
SBS	Chr6	17338424	G-C	HOMO	INTERGENIC
SBS	Chr6	24096112	G-T	HET	START_GAINED	LOC_Os06g40450
SBS	Chr6	29524062	C-T	HET	INTERGENIC
SBS	Chr7	8563563	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr7	26844200	G-A	HET	INTERGENIC
SBS	Chr8	6771465	T-C	HET	INTERGENIC
SBS	Chr8	12902024	T-C	HET	INTERGENIC
SBS	Chr8	18289949	T-C	HET	INTERGENIC
SBS	Chr8	18289951	G-A	HET	INTERGENIC
SBS	Chr8	22215911	A-T	HET	INTRON
SBS	Chr8	24826593	A-T	HOMO	INTERGENIC
SBS	Chr9	10486960	C-T	HET	INTERGENIC
SBS	Chr10	6939872	G-A	HET	INTERGENIC
SBS	Chr10	15463915	C-A	HET	SYNONYMOUS_CODING
SBS	Chr10	21959985	G-T	HET	SYNONYMOUS_CODING
SBS	Chr11	11688550	C-T	HOMO	UTR_5_PRIME

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1105663	1105667	4
Deletion	Chr12	3068111	3068118	7
Deletion	Chr6	3548726	3548730	4
Deletion	Chr6	4567957	4567960	3
Deletion	Chr1	11134627	11134628	1
Deletion	Chr7	12382960	12382962	2	LOC_Os07g22170
Deletion	Chr8	12637581	12637586	5	LOC_Os08g21140
Deletion	Chr3	17775120	17775121	1	LOC_Os03g31210
Deletion	Chr9	18782337	18782346	9
Deletion	Chr2	21037833	21037834	1
Deletion	Chr4	22322894	22323149	255	LOC_Os04g37480
Deletion	Chr5	28306967	28306970	3
Deletion	Chr7	29531250	29531262	12	LOC_Os07g49310
Deletion	Chr1	32557528	32557532	4
Deletion	Chr1	33819658	33819662	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	14520416	14520417	2
Insertion	Chr3	12616157	12616158	2
Insertion	Chr5	21507922	21507922	1
Insertion	Chr12	17547653	17547653	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1046140	28360508	LOC_Os05g02880

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	19229086	Chr1	3183299	2
Translocation	Chr7	19229199	Chr1	3183282	2

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