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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41769986	G-A	HET
SBS	Chr1	5235025	A-T	Homo
SBS	Chr10	11007335	A-G	HET
SBS	Chr10	18941317	C-T	Homo
SBS	Chr11	10858748	G-A	Homo
SBS	Chr11	14572788	G-A	HET
SBS	Chr11	17344380	C-T	HET
SBS	Chr12	2088798	C-A	HET
SBS	Chr12	21635365	T-C	Homo
SBS	Chr12	21635368	A-T	Homo
SBS	Chr3	16340082	T-C	HET
SBS	Chr3	2171889	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04630
SBS	Chr3	2747277	T-C	HET
SBS	Chr3	27961932	G-C	HET
SBS	Chr3	30150707	T-A	HET
SBS	Chr3	32364484	C-T	HET
SBS	Chr3	34378381	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g60460
SBS	Chr4	13531862	G-A	Homo
SBS	Chr4	32761747	A-C	Homo
SBS	Chr5	14818862	A-T	HET
SBS	Chr5	20039340	A-G	HET
SBS	Chr6	26421991	C-T	Homo
SBS	Chr6	9976936	C-T	HET
SBS	Chr7	10870634	T-A	HET
SBS	Chr7	6178664	A-G	HET
SBS	Chr8	16259459	T-C	HET
SBS	Chr8	186579	C-T	HET
SBS	Chr9	20103108	G-A	Homo

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2608686	2608687	1	LOC_Os11g05700
Deletion	Chr9	4753131	4753204	73
Deletion	Chr1	5563089	5563092	3
Deletion	Chr6	5988001	5994000	5999
Deletion	Chr12	7634001	7642000	7999	LOC_Os12g13590
Deletion	Chr4	8312934	8312944	10
Deletion	Chr3	9431399	9431401	2
Deletion	Chr1	9495001	9513000	17999	3
Deletion	Chr1	11023001	11038000	14999	LOC_Os01g19470
Deletion	Chr1	13246001	13260000	13999	2
Deletion	Chr12	18183438	18183440	2
Deletion	Chr4	21638586	21638587	1
Deletion	Chr12	21652759	21652768	9	LOC_Os12g35610
Deletion	Chr1	22708001	22728000	19999	LOC_Os01g40250
Deletion	Chr2	23916001	23939000	22999	LOC_Os02g39640
Deletion	Chr1	24834762	24834768	6
Deletion	Chr11	26145479	26145492	13
Deletion	Chr7	26253094	26253096	2
Deletion	Chr4	26410001	26417000	6999	2
Deletion	Chr3	26906001	26916000	9999
Deletion	Chr6	28208001	28231000	22999	2
Deletion	Chr3	28466294	28466296	2
Deletion	Chr4	30251001	30259000	7999	LOC_Os04g51090
Deletion	Chr4	30498001	30508000	9999	LOC_Os04g51490
Deletion	Chr1	38871188	38871189	1
Deletion	Chr1	41257001	41265000	7999	LOC_Os01g71300
Deletion	Chr1	42684326	42684333	7

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	26907191	26907192	2
Insertion	Chr10	5615330	5615330	1
Insertion	Chr9	20759267	20759268	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	886021	886256
Inversion	Chr12	1995341	1995495
Inversion	Chr3	22963795	22965159	LOC_Os03g41300

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	988556	Chr8	17926995	2
Translocation	Chr10	9913223	Chr2	32908783	2
Translocation	Chr5	11421900	Chr1	15460374	LOC_Os05g19610
Translocation	Chr7	25290578	Chr6	30259638	LOC_Os07g42260

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