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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12045444	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g21536
SBS	Chr1	2998696	G-A	HET	INTERGENIC
SBS	Chr1	33779982	G-T	HET	INTERGENIC
SBS	Chr10	12427593	A-G	HET	INTERGENIC
SBS	Chr11	18530086	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g31680
SBS	Chr12	12436758	C-G	HET	INTRON
SBS	Chr2	721624	A-C	HET	INTERGENIC
SBS	Chr3	13816384	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	22322902	C-A	Homo	INTERGENIC
SBS	Chr3	35836669	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	12711760	A-C	Homo	INTERGENIC
SBS	Chr4	25106657	C-T	Homo	INTRON
SBS	Chr4	34433767	G-T	Homo	INTERGENIC
SBS	Chr4	34505391	C-T	Homo	INTERGENIC
SBS	Chr4	7713825	G-A	Homo	INTRON
SBS	Chr4	9431740	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17190
SBS	Chr5	11527925	G-T	HET	INTRON
SBS	Chr5	9258123	G-A	HET	INTERGENIC
SBS	Chr6	26238325	A-G	Homo	INTERGENIC
SBS	Chr7	24305145	G-A	HET	INTERGENIC
SBS	Chr7	7853027	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr8	14287944	A-G	HET	INTERGENIC
SBS	Chr8	27409122	A-T	HET	START_GAINED	LOC_Os08g43380
SBS	Chr8	6559229	C-T	HET	INTRON
SBS	Chr8	8398736	C-G	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	721359	721490	131
Deletion	Chr2	2286251	2286254	3
Deletion	Chr10	2703022	2703023	1
Deletion	Chr12	3534359	3534362	3
Deletion	Chr9	3625836	3625842	6
Deletion	Chr5	3797254	3797282	28
Deletion	Chr7	4193096	4193111	15
Deletion	Chr7	4772239	4772242	3
Deletion	Chr7	7606997	7607007	10
Deletion	Chr6	8740615	8740631	16
Deletion	Chr3	9156125	9156126	1
Deletion	Chr12	12436563	12436574	11	LOC_Os12g22110
Deletion	Chr11	12568342	12578816	10474	2
Deletion	Chr9	13307187	13307192	5
Deletion	Chr2	13341597	13341598	1
Deletion	Chr3	13468453	13468457	4
Deletion	Chr10	13635390	13635391	1
Deletion	Chr2	14879425	14879437	12	LOC_Os02g25480
Deletion	Chr5	16370939	16370940	1
Deletion	Chr12	16930581	16930586	5
Deletion	Chr8	21504535	21504545	10
Deletion	Chr2	23079107	23079125	18
Deletion	Chr8	25752103	25752127	24	LOC_Os08g40670
Deletion	Chr4	30062489	30062490	1	LOC_Os04g50820
Deletion	Chr1	30502933	30502940	7	LOC_Os01g53079
Deletion	Chr4	30752887	30752974	87
Deletion	Chr1	32324975	32325188	213
Deletion	Chr1	32365060	32365073	13
Deletion	Chr1	39195276	39195284	8

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	4257569	4257569	1
Insertion	Chr12	25691987	25691987	1
Insertion	Chr2	13660797	13660797	1
Insertion	Chr2	27350908	27350911	4
Insertion	Chr2	32970032	32970032	1
Insertion	Chr2	8283895	8283895	1
Insertion	Chr3	32480919	32480980	62
Insertion	Chr4	9538560	9538560	1
Insertion	Chr5	5300443	5300443	1
Insertion	Chr7	25450601	25450601	1	LOC_Os07g42530
Insertion	Chr8	11184004	11184027	24	LOC_Os08g18730
Insertion	Chr8	12055396	12055396	1	LOC_Os08g20110

No Inversion

No Translocation

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