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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	13447174	G-A	HET	INTERGENIC
SBS	Chr10	19993973	T-C	HET	INTERGENIC
SBS	Chr10	5737618	G-A	HET	INTERGENIC
SBS	Chr11	11121747	T-A	HET	INTRON
SBS	Chr11	1144088	C-G	HET	INTERGENIC
SBS	Chr11	16476863	G-C	HET	SYNONYMOUS_CODING
SBS	Chr11	17692818	C-T	HET	INTERGENIC
SBS	Chr12	13501698	G-A	HET	INTRON
SBS	Chr12	21665897	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	35310862	C-T	HET	INTRON
SBS	Chr2	4413699	A-G	HET	SPLICE_SITE_REGION
SBS	Chr3	25563850	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g45280
SBS	Chr3	28858259	C-A	HET	INTRON
SBS	Chr3	4450809	G-A	HET	INTERGENIC
SBS	Chr3	4450811	A-G	HET	INTERGENIC
SBS	Chr4	13121429	C-G	HET	INTERGENIC
SBS	Chr4	18152106	G-C	HET	INTRON
SBS	Chr5	13518996	A-G	HET	INTERGENIC
SBS	Chr5	16597273	A-G	HET	INTERGENIC
SBS	Chr5	22643134	A-C	HET	INTRON
SBS	Chr5	22788001	T-A	HET	INTERGENIC
SBS	Chr5	501319	T-A	HET	INTERGENIC
SBS	Chr6	15276801	A-G	HET	INTRON
SBS	Chr6	28790648	T-A	HET	UTR_3_PRIME
SBS	Chr7	10151327	C-T	HET	INTERGENIC
SBS	Chr7	17087974	A-T	HET	INTERGENIC
SBS	Chr8	10947400	C-T	HET	INTERGENIC
SBS	Chr8	12771736	T-G	HET	INTERGENIC
SBS	Chr8	18401683	A-T	HET	INTERGENIC
SBS	Chr9	1087505	T-C	HET	INTERGENIC
SBS	Chr9	9421770	C-T	Homo	INTRON

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	782246	782252	6
Deletion	Chr6	828576	828579	3	LOC_Os06g02400
Deletion	Chr12	1356536	1356549	13
Deletion	Chr4	2243416	2243440	24	LOC_Os04g04660
Deletion	Chr5	2339784	2339785	1
Deletion	Chr6	3425266	3425283	17
Deletion	Chr4	3440427	3440442	15
Deletion	Chr11	4037737	4037741	4
Deletion	Chr9	4712866	4712867	1
Deletion	Chr7	5014058	5014059	1
Deletion	Chr11	5813421	5813422	1
Deletion	Chr8	6471242	6471243	1
Deletion	Chr10	8537419	8537432	13
Deletion	Chr3	11165795	11165796	1
Deletion	Chr5	11580439	11580440	1
Deletion	Chr9	11631521	11631522	1
Deletion	Chr11	12121862	12121865	3
Deletion	Chr12	12918934	12918935	1
Deletion	Chr8	13492441	13492451	10
Deletion	Chr1	13729515	13729620	105
Deletion	Chr1	14221755	14221765	10
Deletion	Chr1	17343714	17343715	1
Deletion	Chr6	18334383	18334384	1
Deletion	Chr4	18831260	18842850	11590	2
Deletion	Chr6	19601085	19601087	2
Deletion	Chr10	19994009	19994016	7
Deletion	Chr5	21023064	21023068	4
Deletion	Chr12	22900096	22900097	1
Deletion	Chr7	23067593	23068626	1033
Deletion	Chr12	23447939	23447959	20
Deletion	Chr7	24032521	24032534	13
Deletion	Chr12	24312050	24312052	2
Deletion	Chr8	25088502	25088512	10
Deletion	Chr12	25613426	25613433	7	LOC_Os12g41300
Deletion	Chr12	25807763	25807765	2	LOC_Os12g41690
Deletion	Chr6	26711992	26711993	1
Deletion	Chr4	28329054	28329068	14	LOC_Os04g47740
Deletion	Chr5	28606984	28606988	4
Deletion	Chr6	29724518	29724519	1
Deletion	Chr2	30280023	30280024	1
Deletion	Chr4	33225772	33225773	1
Deletion	Chr1	40391688	40391694	6	LOC_Os01g69904
Deletion	Chr1	40820405	40820421	16

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13350424	13350444	21
Insertion	Chr1	21317022	21317022	1
Insertion	Chr1	39666745	39666792	48
Insertion	Chr11	22360199	22360221	23
Insertion	Chr11	8175447	8175513	67
Insertion	Chr3	14279840	14279841	2
Insertion	Chr3	6180775	6180775	1
Insertion	Chr4	27963828	27963828	1
Insertion	Chr5	18743356	18743373	18	LOC_Os05g32150
Insertion	Chr5	20708415	20708420	6
Insertion	Chr6	24690339	24690344	6
Insertion	Chr7	11792515	11792516	2
Insertion	Chr7	9166822	9166823	2
Insertion	Chr8	15507494	15507494	1
Insertion	Chr8	20336766	20336779	14
Insertion	Chr8	20447908	20447978	71	LOC_Os08g32950
Insertion	Chr8	25678116	25678118	3
Insertion	Chr8	3053677	3053677	1	LOC_Os08g05690
Insertion	Chr8	3168958	3168959	2

No Inversion

No Translocation

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