Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22410212	A-G	Homo	INTRON
SBS	Chr10	12674791	G-A	HET	INTERGENIC
SBS	Chr10	1424915	C-G	Homo	INTERGENIC
SBS	Chr10	19758875	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g36880
SBS	Chr10	22905633	G-T	HET	INTERGENIC
SBS	Chr10	23072495	C-T	HET	INTERGENIC
SBS	Chr11	12645430	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g22000
SBS	Chr11	23638050	C-T	HET	INTERGENIC
SBS	Chr11	24708058	C-G	HET	INTERGENIC
SBS	Chr11	7987108	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr12	24855298	A-G	HET	INTERGENIC
SBS	Chr2	12755498	C-T	HET	INTERGENIC
SBS	Chr2	19175765	G-A	HET	INTERGENIC
SBS	Chr2	30403031	G-T	HET	INTRON
SBS	Chr2	7930367	T-C	HET	INTERGENIC
SBS	Chr3	20463986	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	6922742	T-A	Homo	INTERGENIC
SBS	Chr4	27269884	A-G	HET	INTERGENIC
SBS	Chr5	12227293	A-T	HET	INTERGENIC
SBS	Chr5	17393812	C-T	HET	INTERGENIC
SBS	Chr5	20757363	C-T	HET	INTERGENIC
SBS	Chr6	29830042	C-T	HET	INTRON
SBS	Chr7	1129371	A-T	HET	INTERGENIC
SBS	Chr7	12856830	T-A	Homo	INTERGENIC
SBS	Chr7	25276296	C-T	HET	INTRON
SBS	Chr7	26395818	A-G	Homo	INTRON
SBS	Chr7	26395819	G-A	Homo	INTRON
SBS	Chr8	1618445	A-T	Homo	INTERGENIC
SBS	Chr8	273151	C-T	HET	UTR_3_PRIME
SBS	Chr9	12462740	G-A	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3478370	3478371	1
Deletion	Chr12	4664594	4664611	17
Deletion	Chr3	6276898	6276901	3	LOC_Os03g11970
Deletion	Chr10	6407832	6407834	2
Deletion	Chr10	7139427	7139428	1
Deletion	Chr6	7544076	7544154	78
Deletion	Chr11	7849046	7849048	2
Deletion	Chr2	7933165	7933170	5
Deletion	Chr2	8361458	8362049	591	LOC_Os02g14980
Deletion	Chr7	9359689	9359690	1	LOC_Os07g16054
Deletion	Chr9	12252232	12252233	1
Deletion	Chr6	12448801	12448802	1
Deletion	Chr12	13071960	13071961	1	LOC_Os12g23120
Deletion	Chr5	13786242	13786243	1
Deletion	Chr3	13968958	13968960	2
Deletion	Chr6	14715585	14715586	1
Deletion	Chr12	15730470	15730471	1
Deletion	Chr12	17255243	17255246	3
Deletion	Chr3	18516914	18516917	3	LOC_Os03g32370
Deletion	Chr11	19807001	19839000	32000	5
Deletion	Chr6	20589674	20608157	18483	2
Deletion	Chr2	22146849	22146851	2	LOC_Os02g36700
Deletion	Chr11	22255634	22255635	1
Deletion	Chr2	22271287	22271303	16
Deletion	Chr9	22502344	22502349	5
Deletion	Chr5	23953524	23953538	14
Deletion	Chr7	24831001	24897000	66000	9
Deletion	Chr6	26415083	26415089	6
Deletion	Chr11	26716027	26716044	17	LOC_Os11g44220
Deletion	Chr3	29280008	29280013	5
Deletion	Chr3	31900589	31900590	1
Deletion	Chr3	32506504	32506512	8

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	34781239	34781239	1
Insertion	Chr10	2306966	2306977	12
Insertion	Chr11	7921102	7921143	42
Insertion	Chr12	11690036	11690036	1
Insertion	Chr12	27259523	27259523	1
Insertion	Chr4	10240860	10240865	6
Insertion	Chr4	11120664	11120667	4
Insertion	Chr4	32121481	32121481	1
Insertion	Chr5	21639916	21639916	1
Insertion	Chr5	5992606	5992609	4
Insertion	Chr6	22502905	22502906	2
Insertion	Chr6	6394410	6394410	1
Insertion	Chr6	8656154	8656180	27
Insertion	Chr7	386361	386362	2
Insertion	Chr8	1332141	1332141	1
Insertion	Chr8	24724154	24724155	2
Insertion	Chr8	26530008	26530008	1
Insertion	Chr9	9197671	9197672	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	24543341	24619753	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	15161379	Chr2	4449264	LOC_Os09g25320
Translocation	Chr4	24619796	Chr2	14658127	LOC_Os04g41510

Main menu