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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16421596	C-T	Homo	INTERGENIC
SBS	Chr1	8964850	A-T	HET	INTRON
SBS	Chr10	5405550	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	4108833	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr11	4108834	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr11	6003209	G-T	HET	INTERGENIC
SBS	Chr11	6003239	G-A	HET	INTERGENIC
SBS	Chr12	13059643	G-A	HET	INTERGENIC
SBS	Chr2	14180372	G-A	HET	STOP_GAINED	LOC_Os02g24480
SBS	Chr2	5235125	T-C	HET	INTERGENIC
SBS	Chr2	8845176	C-A	HET	INTERGENIC
SBS	Chr3	14094618	G-T	HET	START_GAINED	LOC_Os03g24730
SBS	Chr4	11182404	C-G	HET	INTERGENIC
SBS	Chr4	11205109	G-C	HET	INTERGENIC
SBS	Chr4	1307222	A-T	Homo	INTERGENIC
SBS	Chr4	34459052	T-G	HET	INTRON
SBS	Chr4	7447360	G-A	HET	INTERGENIC
SBS	Chr5	13751945	C-T	HET	INTERGENIC
SBS	Chr5	17840811	C-A	Homo	INTERGENIC
SBS	Chr5	8012170	C-T	Homo	INTERGENIC
SBS	Chr6	16000489	C-T	HET	INTERGENIC
SBS	Chr7	1896977	G-C	HET	INTERGENIC
SBS	Chr7	238290	G-A	HET	INTERGENIC
SBS	Chr8	19508921	A-T	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	782460	782465	5
Deletion	Chr11	4736770	4736776	6	LOC_Os11g08950
Deletion	Chr5	7692271	7692281	10
Deletion	Chr10	9183911	9183912	1
Deletion	Chr2	9636617	9636624	7
Deletion	Chr8	10105651	10105657	6
Deletion	Chr11	11115610	11115611	1
Deletion	Chr1	11135381	11135383	2
Deletion	Chr12	14616755	14616756	1	LOC_Os12g25340
Deletion	Chr2	15714321	15714350	29
Deletion	Chr9	16550866	16550870	4
Deletion	Chr11	16933519	16933521	2
Deletion	Chr2	16996511	16996520	9
Deletion	Chr3	17729856	17729869	13
Deletion	Chr11	18812292	18812295	3
Deletion	Chr4	19436571	19436576	5
Deletion	Chr4	20750407	20750413	6	LOC_Os04g34260
Deletion	Chr8	21335745	21335767	22
Deletion	Chr6	24308135	24308136	1
Deletion	Chr1	25561100	25561102	2	LOC_Os01g45030
Deletion	Chr1	26379274	26379275	1
Deletion	Chr7	27225287	27225295	8	LOC_Os07g45610
Deletion	Chr4	30596536	30596537	1
Deletion	Chr4	31837268	31837275	7
Deletion	Chr4	34531275	34531289	14

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	6020685	6020756	72
Insertion	Chr12	19460202	19460269	68
Insertion	Chr12	26447840	26447840	1
Insertion	Chr2	22675675	22675676	2
Insertion	Chr6	18611156	18611157	2
Insertion	Chr7	11785252	11785255	4
Insertion	Chr7	27758178	27758178	1
Insertion	Chr9	1239260	1239260	1
Insertion	Chr9	17173045	17173048	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4224020	4417074	2
Inversion	Chr11	4224043	4417091	2
Inversion	Chr4	13716117	14524153
Inversion	Chr6	29478208	29692108	LOC_Os06g48720

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8892745	Chr7	24229874	2
Translocation	Chr12	27344056	Chr11	28939328	2

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