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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	856254	C-T	HET
SBS	Chr2	6547423	A-C	HET
SBS	Chr2	6695134	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g12780
SBS	Chr2	19471423	T-C	HET
SBS	Chr2	32754303	A-G	Homo
SBS	Chr2	35599558	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g58170
SBS	Chr3	25116563	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44610
SBS	Chr3	25808887	A-C	HET
SBS	Chr3	30174856	G-A	Homo
SBS	Chr3	33803501	T-G	Homo
SBS	Chr4	13182618	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g23180
SBS	Chr4	22275782	G-A	HET
SBS	Chr4	24580611	C-A	Homo
SBS	Chr4	25954990	C-A	HET
SBS	Chr4	30895344	G-A	Homo
SBS	Chr5	15097930	C-A	Homo
SBS	Chr5	23005216	G-A	HET	STOP_GAINED	LOC_Os05g39230
SBS	Chr5	26561480	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45850
SBS	Chr6	6176983	G-A	Homo
SBS	Chr6	23942487	G-A	HET
SBS	Chr6	24574755	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g41110
SBS	Chr7	11143768	G-A	HET
SBS	Chr8	7199651	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12220
SBS	Chr9	15411070	T-A	HET
SBS	Chr9	17687780	G-A	Homo
SBS	Chr11	16475070	A-G	Homo
SBS	Chr11	19458506	T-C	Homo
SBS	Chr11	24333300	T-A	HET

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	412144	412152	8
Deletion	Chr11	756688	756689	1
Deletion	Chr6	2534303	2534311	8
Deletion	Chr7	3623001	3642000	18999	LOC_Os07g07300
Deletion	Chr2	4645001	4697000	51999	8
Deletion	Chr6	6077277	6077279	2
Deletion	Chr11	6713565	6714225	660	LOC_Os11g12060
Deletion	Chr4	6787465	6787477	12
Deletion	Chr12	7407001	7414000	6999	LOC_Os12g13295
Deletion	Chr11	9487615	9487616	1
Deletion	Chr10	12560001	12611000	50999	10
Deletion	Chr12	12939001	12956000	16999	LOC_Os12g22920
Deletion	Chr9	15171001	15202000	30999	3
Deletion	Chr6	15372674	15372676	2
Deletion	Chr11	15816001	15838000	21999	4
Deletion	Chr8	16473727	16473728	1	LOC_Os08g26970
Deletion	Chr12	19237591	19237593	2
Deletion	Chr12	21093607	21093608	1	LOC_Os12g34740
Deletion	Chr5	21649619	21649624	5
Deletion	Chr2	21728530	21728533	3	LOC_Os02g36100
Deletion	Chr4	23207108	23207109	1
Deletion	Chr1	23570392	23570399	7
Deletion	Chr12	23857001	23875000	17999	3
Deletion	Chr11	23956001	23978000	21999	2
Deletion	Chr6	24312587	24312588	1
Deletion	Chr6	24429001	24448000	18999
Deletion	Chr11	25784001	25807000	22999	5
Deletion	Chr6	26197268	26197274	6
Deletion	Chr1	36847121	36847122	1	LOC_Os01g63550

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	31924198	31924198	1
Insertion	Chr7	9761582	9761582	1
Insertion	Chr10	10142508	10142508	1
Insertion	Chr11	20879985	20879985	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3716232	3716396	LOC_Os03g07300
Inversion	Chr7	16453174	16453627

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3129575	Chr6	18190025
Translocation	Chr10	4779312	Chr8	16360159	LOC_Os10g08830
Translocation	Chr10	12606959	Chr8	21844153	2
Translocation	Chr10	12608411	Chr8	21844106	2
Translocation	Chr12	15191193	Chr4	18885976
Translocation	Chr11	28474691	Chr5	18592195	2
Translocation	Chr11	28503482	Chr3	16387889

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