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Mutant Information

Mutant Name	FN1573-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1573-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 52

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12558108	A-T	HET	INTERGENIC
SBS	Chr1	16156299	A-G	HET	INTERGENIC
SBS	Chr1	16686940	T-C	HET	INTRON
SBS	Chr1	32049168	G-A	HET	INTERGENIC
SBS	Chr1	3225194	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g06790
SBS	Chr1	33036593	C-T	HET	INTRON
SBS	Chr1	33243108	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	35973959	G-A	HET	INTERGENIC
SBS	Chr1	36908262	G-A	HET	INTRON
SBS	Chr1	40863736	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g70560
SBS	Chr10	13142020	G-A	Homo	INTERGENIC
SBS	Chr10	15204224	C-T	Homo	INTERGENIC
SBS	Chr10	7537920	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13870
SBS	Chr10	9752778	A-C	HET	INTERGENIC
SBS	Chr11	15422684	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26850
SBS	Chr11	15567450	G-T	HET	INTERGENIC
SBS	Chr11	27154975	G-C	HET	INTERGENIC
SBS	Chr11	5300671	T-G	HET	INTERGENIC
SBS	Chr12	15419371	A-T	HET	INTERGENIC
SBS	Chr12	15419372	A-T	HET	INTERGENIC
SBS	Chr12	20124227	C-T	Homo	INTERGENIC
SBS	Chr12	9642274	G-A	HET	INTERGENIC
SBS	Chr2	11928762	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20260
SBS	Chr2	12881435	C-T	HET	INTERGENIC
SBS	Chr2	16061659	C-T	HET	INTERGENIC
SBS	Chr2	32877352	C-G	Homo	INTERGENIC
SBS	Chr3	13765114	C-T	HET	INTERGENIC
SBS	Chr3	13809368	G-T	HET	INTERGENIC
SBS	Chr3	16249070	T-G	Homo	INTERGENIC
SBS	Chr4	1063937	C-T	Homo	INTRON
SBS	Chr4	20220804	C-A	HET	INTERGENIC
SBS	Chr4	26990543	T-G	Homo	INTERGENIC
SBS	Chr4	3748188	T-A	HET	INTERGENIC
SBS	Chr5	11425996	C-T	HET	INTRON
SBS	Chr5	15771333	G-A	HET	INTRON
SBS	Chr5	15771334	G-A	HET	INTRON
SBS	Chr5	2004108	C-T	Homo	INTERGENIC
SBS	Chr5	28037530	T-C	HET	INTRON
SBS	Chr5	4470871	G-T	HET	INTERGENIC
SBS	Chr5	9539907	G-C	HET	INTERGENIC
SBS	Chr6	20507492	G-A	HET	INTERGENIC
SBS	Chr6	3174757	T-C	HET	INTERGENIC
SBS	Chr7	14360545	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	14360547	C-A	HET	STOP_GAINED	LOC_Os07g25130
SBS	Chr7	2292129	G-A	HET	INTERGENIC
SBS	Chr7	23717821	C-T	HET	INTRON
SBS	Chr8	16595179	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	19238622	T-C	HET	INTERGENIC
SBS	Chr8	599977	G-A	HET	INTERGENIC
SBS	Chr8	599978	T-G	HET	INTERGENIC
SBS	Chr9	11724773	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g19610
SBS	Chr9	2873773	C-A	Homo	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1058239	1058250	11	LOC_Os10g02700
Deletion	Chr3	1584140	1584150	10	LOC_Os03g03610
Deletion	Chr2	1894936	1894938	2
Deletion	Chr7	2352867	2352889	22
Deletion	Chr7	2446697	2446705	8
Deletion	Chr1	3225134	3225138	4	LOC_Os01g06790
Deletion	Chr7	6010299	6010301	2
Deletion	Chr8	6154818	6154820	2
Deletion	Chr3	7666417	7666475	58
Deletion	Chr1	8829349	8829354	5
Deletion	Chr11	9207576	9207577	1
Deletion	Chr6	9478676	9478677	1
Deletion	Chr1	11530217	11530218	1
Deletion	Chr11	11764210	11764211	1
Deletion	Chr10	11943880	11943881	1
Deletion	Chr8	12963275	12963294	19	LOC_Os08g21690
Deletion	Chr8	13468469	13468470	1
Deletion	Chr7	14326927	14326942	15	LOC_Os07g25090
Deletion	Chr7	16127881	16128021	140
Deletion	Chr2	16302498	16303120	622
Deletion	Chr5	18084584	18084585	1
Deletion	Chr4	18654626	18654627	1
Deletion	Chr9	19731760	19731774	14
Deletion	Chr5	20353081	20353083	2
Deletion	Chr7	20974659	20974664	5	LOC_Os07g35004
Deletion	Chr7	24094094	24094095	1
Deletion	Chr4	26856219	26856223	4	LOC_Os04g45400
Deletion	Chr12	27167799	27167806	7
Deletion	Chr2	33589762	33589763	1
Deletion	Chr1	35067677	35067693	16
Deletion	Chr1	36815798	36815801	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	3644733	3644734	2
Insertion	Chr11	15420607	15420619	13	LOC_Os11g26850
Insertion	Chr12	13836933	13836995	63
Insertion	Chr2	19377229	19377232	4
Insertion	Chr8	17660140	17660185	46

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1384420	2141265	LOC_Os10g03270
Inversion	Chr6	25477241	26150451
Inversion	Chr6	26150453	26157214	LOC_Os06g43510

No Translocation

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