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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19429172	C-T	HET	INTRON
SBS	Chr1	40126191	C-A	HET	INTERGENIC
SBS	Chr10	16672545	C-A	HET	INTRON
SBS	Chr10	9301280	G-A	HET	INTRON
SBS	Chr11	18034811	A-T	HET	INTERGENIC
SBS	Chr11	18926774	A-G	HET	INTERGENIC
SBS	Chr11	24322522	T-C	HET	INTERGENIC
SBS	Chr2	12317141	G-T	HET	INTRON
SBS	Chr3	11447194	T-A	HET	INTERGENIC
SBS	Chr3	1829114	C-T	HET	INTERGENIC
SBS	Chr3	23123639	G-A	Homo	INTERGENIC
SBS	Chr3	27362819	T-G	HET	INTERGENIC
SBS	Chr3	29447520	C-T	HET	INTERGENIC
SBS	Chr3	29533626	A-G	HET	INTERGENIC
SBS	Chr3	34929955	T-C	HET	INTERGENIC
SBS	Chr3	4040670	G-A	HET	INTERGENIC
SBS	Chr3	4160217	G-A	HET	INTERGENIC
SBS	Chr3	4362567	G-A	HET	INTRON
SBS	Chr3	5792500	C-A	HET	INTERGENIC
SBS	Chr3	5995069	T-G	HET	INTRON
SBS	Chr3	6411356	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g12220
SBS	Chr3	7522578	C-T	Homo	INTERGENIC
SBS	Chr3	9593595	C-T	HET	INTRON
SBS	Chr4	16334172	C-T	HET	INTRON
SBS	Chr4	1836475	T-A	HET	INTRON
SBS	Chr4	31529212	G-A	HET	INTRON
SBS	Chr6	15519406	C-G	Homo	INTERGENIC
SBS	Chr6	22063462	C-T	HET	INTERGENIC
SBS	Chr6	24743920	G-A	HET	INTERGENIC
SBS	Chr6	9308339	C-T	Homo	INTERGENIC
SBS	Chr7	4172822	G-A	HET	INTERGENIC
SBS	Chr7	4172823	T-A	HET	INTERGENIC
SBS	Chr7	4172824	A-C	HET	INTERGENIC
SBS	Chr8	12324413	C-T	Homo	INTERGENIC
SBS	Chr9	10455630	T-C	HET	INTERGENIC
SBS	Chr9	10998745	G-A	HET	INTERGENIC
SBS	Chr9	1728165	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03500
SBS	Chr9	18101066	C-T	HET	INTERGENIC
SBS	Chr9	18101068	C-G	HET	INTERGENIC
SBS	Chr9	3224498	G-A	HET	INTERGENIC
SBS	Chr9	8482786	C-T	HET	SYNONYMOUS_CODING

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	708509	708515	6
Deletion	Chr3	1825091	1825104	13	LOC_Os03g04000
Deletion	Chr7	2795860	2795872	12	LOC_Os07g05810
Deletion	Chr9	3400981	3401516	535	LOC_Os09g07010
Deletion	Chr3	3694948	3694950	2
Deletion	Chr6	4171864	4171878	14	LOC_Os06g08480
Deletion	Chr3	4479338	4479347	9
Deletion	Chr3	4749517	4749518	1	LOC_Os03g09120
Deletion	Chr1	5286461	5286462	1
Deletion	Chr1	5763419	5782119	18700	6
Deletion	Chr3	8910585	8910593	8
Deletion	Chr3	9714244	9714246	2
Deletion	Chr6	9762737	9762738	1
Deletion	Chr3	10847158	10847184	26
Deletion	Chr3	10883674	10883676	2
Deletion	Chr2	11781594	11781596	2	LOC_Os02g20010
Deletion	Chr9	12239911	12239913	2
Deletion	Chr10	13331877	13331880	3
Deletion	Chr5	13712723	13712724	1
Deletion	Chr9	14761264	14761265	1
Deletion	Chr4	15219036	15219037	1
Deletion	Chr2	15621705	15621706	1
Deletion	Chr6	16334873	16334883	10
Deletion	Chr11	18937849	18937865	16	LOC_Os11g32110
Deletion	Chr9	20159233	20159234	1	LOC_Os09g34150
Deletion	Chr2	20324307	20324322	15	LOC_Os02g34030
Deletion	Chr9	20563755	20563756	1
Deletion	Chr12	22889707	22889711	4
Deletion	Chr2	23103954	23103956	2
Deletion	Chr7	23110573	23110582	9
Deletion	Chr8	23528681	23528708	27
Deletion	Chr5	25071762	25071768	6
Deletion	Chr6	26386188	26386190	2
Deletion	Chr6	26684687	26684709	22
Deletion	Chr1	27071934	27071952	18
Deletion	Chr1	28532120	28532140	20
Deletion	Chr7	28970120	28970121	1
Deletion	Chr1	38982744	38982761	17
Deletion	Chr1	41684598	41684599	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	1586845	1586847	3	LOC_Os12g03860
Insertion	Chr12	27110447	27110518	72	LOC_Os12g43640
Insertion	Chr2	12658737	12658737	1
Insertion	Chr3	30630610	30630611	2
Insertion	Chr3	536553	536562	10
Insertion	Chr4	33496912	33496912	1
Insertion	Chr4	524552	524555	4
Insertion	Chr5	20925680	20925680	1
Insertion	Chr5	28539576	28539585	10
Insertion	Chr5	7022961	7022972	12
Insertion	Chr5	9868725	9868725	1
Insertion	Chr6	26142892	26142899	8
Insertion	Chr7	10121392	10121435	44
Insertion	Chr7	1501250	1501253	4
Insertion	Chr8	14433173	14433173	1
Insertion	Chr8	22508646	22508646	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5780919	6362487	LOC_Os01g11750
Inversion	Chr3	17720780	19449844	LOC_Os03g31110

No Translocation

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