Search Results
| Mutant Information |
|---|
| Mutant Name | FN1579-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1579-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9662808 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 9662809 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 9662810 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 10654446 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g18850 |
| SBS | Chr1 | 17335812 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 36053478 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1337561 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g03310 |
| SBS | Chr2 | 19947577 | A-C | HET | INTRON | |
| SBS | Chr2 | 22013687 | C-T | HET | INTRON | |
| SBS | Chr2 | 33497615 | C-T | HET | INTRON | |
| SBS | Chr3 | 22370391 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 23552634 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 17318637 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 21123705 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g36550 |
| SBS | Chr5 | 4582177 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g08400 |
| SBS | Chr5 | 24724013 | G-C | HET | INTERGENIC | |
| SBS | Chr6 | 14255120 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 14255123 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 8716231 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 9806669 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 5138315 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 9937651 | G-C | HET | INTRON | |
| SBS | Chr9 | 20008035 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10981533 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 14031305 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 8306214 | T-A | HET | INTRON |
Deletions: 28
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 1787725 | 1787735 | 10 | |
| Deletion | Chr5 | 2390500 | 2390501 | 1 | |
| Deletion | Chr3 | 4983838 | 4983841 | 3 | |
| Deletion | Chr6 | 5718500 | 5718502 | 2 | |
| Deletion | Chr10 | 5925584 | 5925585 | 1 | |
| Deletion | Chr7 | 7964108 | 7964109 | 1 | |
| Deletion | Chr1 | 10098199 | 10098202 | 3 | |
| Deletion | Chr11 | 10846037 | 10846040 | 3 | |
| Deletion | Chr6 | 11927607 | 11927608 | 1 | LOC_Os06g20710 |
| Deletion | Chr5 | 13271658 | 13271674 | 16 | LOC_Os05g23250 |
| Deletion | Chr10 | 13373830 | 13373835 | 5 | |
| Deletion | Chr3 | 15928457 | 15928465 | 8 | |
| Deletion | Chr7 | 15965256 | 15965263 | 7 | |
| Deletion | Chr1 | 17540990 | 17540991 | 1 | |
| Deletion | Chr1 | 19119377 | 19119382 | 5 | |
| Deletion | Chr1 | 19133072 | 19133073 | 1 | |
| Deletion | Chr4 | 19307125 | 19307126 | 1 | |
| Deletion | Chr5 | 19692035 | 19692050 | 15 | LOC_Os05g33520 |
| Deletion | Chr2 | 19947584 | 19947593 | 9 | |
| Deletion | Chr6 | 23134320 | 23134323 | 3 | |
| Deletion | Chr7 | 23474618 | 23474622 | 4 | |
| Deletion | Chr3 | 24678623 | 24678624 | 1 | |
| Deletion | Chr2 | 25811735 | 25811750 | 15 | LOC_Os02g42910 |
| Deletion | Chr4 | 28271691 | 28271706 | 15 | |
| Deletion | Chr11 | 28435996 | 28435997 | 1 | LOC_Os11g47290 |
| Deletion | Chr1 | 29539543 | 29539595 | 52 | |
| Deletion | Chr2 | 31188838 | 31188844 | 6 | |
| Deletion | Chr1 | 36677517 | 36677524 | 7 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 30785568 | 30785568 | 1 | |
| Insertion | Chr1 | 35028985 | 35028985 | 1 | |
| Insertion | Chr2 | 21987056 | 21987056 | 1 | LOC_Os02g36400 |
| Insertion | Chr10 | 20755596 | 20755617 | 22 | |
| Insertion | Chr11 | 7305318 | 7305323 | 6 | |
| Insertion | Chr11 | 25763332 | 25763335 | 4 |
No Inversion
No Translocation