Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	141441	T-A	HET	UTR_3_PRIME
SBS	Chr1	2836818	C-T	HET	INTRON
SBS	Chr1	38672184	G-A	HET	INTERGENIC
SBS	Chr1	42401251	C-T	HET	INTERGENIC
SBS	Chr1	43015889	C-T	HET	INTERGENIC
SBS	Chr10	12981280	C-T	HET	INTRON
SBS	Chr11	13029333	G-A	HET	INTERGENIC
SBS	Chr11	17670083	A-G	HET	INTERGENIC
SBS	Chr11	22369472	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37780
SBS	Chr11	23321936	C-G	HET	INTERGENIC
SBS	Chr11	9085721	C-T	HET	INTERGENIC
SBS	Chr12	21024179	G-T	HET	INTERGENIC
SBS	Chr2	16356306	C-A	HET	INTRON
SBS	Chr3	24323657	G-T	HET	INTERGENIC
SBS	Chr3	29218680	C-T	HET	INTERGENIC
SBS	Chr3	31941483	C-T	HET	INTERGENIC
SBS	Chr3	32574595	G-A	HET	INTRON
SBS	Chr3	32574604	T-A	HET	INTRON
SBS	Chr4	13917986	C-T	HET	INTERGENIC
SBS	Chr4	5853983	C-T	HET	INTERGENIC
SBS	Chr5	17052612	C-T	HET	INTRON
SBS	Chr5	25322312	C-T	HET	INTRON
SBS	Chr5	2716820	T-A	HET	UTR_3_PRIME
SBS	Chr5	2716822	T-A	HET	UTR_3_PRIME
SBS	Chr5	4889555	A-G	HET	INTRON
SBS	Chr5	5963950	A-T	HET	INTERGENIC
SBS	Chr5	7915116	C-T	HET	INTRON
SBS	Chr7	11259086	C-T	HET	INTERGENIC
SBS	Chr8	7888086	A-C	HET	INTERGENIC
SBS	Chr9	11526090	C-A	HET	INTERGENIC
SBS	Chr9	1900784	T-A	HET	UTR_3_PRIME
SBS	Chr9	22865355	C-A	HET	INTRON

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	328997	328999	2
Deletion	Chr5	2431698	2431709	11	LOC_Os05g05010
Deletion	Chr5	2540993	2541003	10
Deletion	Chr5	3048054	3048068	14
Deletion	Chr7	4252927	4252933	6	LOC_Os07g08300
Deletion	Chr9	4941817	4941818	1
Deletion	Chr10	5704857	5704859	2
Deletion	Chr8	6251498	6251508	10	LOC_Os08g10612
Deletion	Chr2	6269283	6269289	6
Deletion	Chr6	6837790	6852038	14248	LOC_Os06g12600
Deletion	Chr8	9043557	9043631	74
Deletion	Chr8	9880905	9880907	2
Deletion	Chr7	11037169	11037172	3
Deletion	Chr8	13780187	13780192	5	LOC_Os08g22920
Deletion	Chr12	14521950	14521951	1
Deletion	Chr10	14641001	14749000	108000	14
Deletion	Chr11	15761101	15761110	9
Deletion	Chr8	16387203	16387205	2
Deletion	Chr5	17935498	17935500	2
Deletion	Chr11	18118474	18118479	5
Deletion	Chr3	18134877	18134893	16
Deletion	Chr2	18443455	18443462	7
Deletion	Chr6	18887166	18899357	12191	LOC_Os06g32490
Deletion	Chr4	19669842	19669851	9	LOC_Os04g32640
Deletion	Chr11	22376938	22376939	1
Deletion	Chr7	23689006	23689011	5
Deletion	Chr7	24537535	24537536	1
Deletion	Chr6	24774690	24774691	1
Deletion	Chr2	26412755	26412757	2
Deletion	Chr8	27624862	27624864	2
Deletion	Chr4	29651040	29651045	5
Deletion	Chr3	30230241	30230249	8	LOC_Os03g52730
Deletion	Chr2	30607676	30607677	1
Deletion	Chr2	32808356	32808358	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23976162	23976163	2	LOC_Os01g42294
Insertion	Chr10	2820946	2820946	1
Insertion	Chr3	1185321	1185322	2
Insertion	Chr3	36062573	36062586	14
Insertion	Chr4	27444221	27444223	3
Insertion	Chr5	46709	46717	9
Insertion	Chr7	8574640	8574640	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2582452	2964188	LOC_Os10g05870
Inversion	Chr10	2964185	3165880	LOC_Os10g05870
Inversion	Chr10	3012394	12864006
Inversion	Chr10	3012438	3165953
Inversion	Chr10	14507328	14748895	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3010943	Chr4	24091624
Translocation	Chr10	3011155	Chr4	24091616
Translocation	Chr10	3011160	Chr4	20624036
Translocation	Chr10	3011987	Chr4	20624009
Translocation	Chr10	3012277	Chr4	28316569	LOC_Os04g47720
Translocation	Chr10	12864049	Chr4	28316570	LOC_Os04g47720
Translocation	Chr10	12980885	Chr4	28342343	2
Translocation	Chr10	14540551	Chr5	21535561	2

Main menu