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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42929885	T-A	HET	INTERGENIC
SBS	Chr1	6603405	T-G	HET	INTERGENIC
SBS	Chr10	13926058	C-T	HET	INTERGENIC
SBS	Chr10	17432821	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33230
SBS	Chr10	5914971	G-C	HET	INTERGENIC
SBS	Chr11	22880010	T-A	HET	INTRON
SBS	Chr11	28533380	G-C	Homo	INTERGENIC
SBS	Chr11	4320944	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08230
SBS	Chr12	13792524	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	24043240	G-A	Homo	INTERGENIC
SBS	Chr2	8709671	T-C	HET	INTERGENIC
SBS	Chr3	19852552	T-G	HET	INTRON
SBS	Chr3	32396392	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g56869
SBS	Chr3	7061228	G-A	HET	INTERGENIC
SBS	Chr3	8738022	C-T	HET	INTRON
SBS	Chr4	1553940	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g03560
SBS	Chr4	17006703	T-C	HET	INTERGENIC
SBS	Chr5	10158833	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17650
SBS	Chr5	24824624	T-G	Homo	INTERGENIC
SBS	Chr5	6709328	C-T	HET	INTERGENIC
SBS	Chr5	7345320	A-G	HET	INTERGENIC
SBS	Chr6	11481745	C-T	Homo	INTERGENIC
SBS	Chr7	12403177	C-T	Homo	INTERGENIC
SBS	Chr7	16604359	C-T	HET	INTERGENIC
SBS	Chr7	17714712	C-G	HET	INTERGENIC
SBS	Chr7	21056730	G-A	HET	INTERGENIC
SBS	Chr7	21406092	G-C	HET	INTERGENIC
SBS	Chr7	26844200	G-A	HET	INTERGENIC
SBS	Chr7	5808453	A-G	HET	INTRON
SBS	Chr7	8563563	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr8	10757764	G-A	HET	INTERGENIC
SBS	Chr8	16616804	C-T	HET	INTRON
SBS	Chr8	16616805	C-T	HET	INTRON
SBS	Chr8	27473254	T-C	Homo	INTERGENIC
SBS	Chr8	9660104	C-T	HET	INTERGENIC
SBS	Chr9	7951684	G-C	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	626005	626006	1
Deletion	Chr12	1251785	1251786	1
Deletion	Chr3	2789662	2789686	24
Deletion	Chr9	2960840	2960842	2
Deletion	Chr2	4167178	4167185	7	LOC_Os02g07960
Deletion	Chr7	4450071	4450109	38
Deletion	Chr12	4613578	4613579	1
Deletion	Chr1	6236054	6236065	11
Deletion	Chr3	6426888	6426908	20	LOC_Os03g12236
Deletion	Chr7	8452729	8452730	1	LOC_Os07g14800
Deletion	Chr10	9020005	9020008	3
Deletion	Chr1	9105570	9105571	1
Deletion	Chr11	9328077	9328138	61
Deletion	Chr9	11356385	11356386	1
Deletion	Chr1	12698489	12698563	74
Deletion	Chr7	12848499	12848501	2	LOC_Os07g22770
Deletion	Chr2	13330923	13330925	2	LOC_Os02g22320
Deletion	Chr4	14979650	14979651	1
Deletion	Chr1	15549394	15549425	31
Deletion	Chr8	15928568	15928934	366
Deletion	Chr9	19021958	19021963	5
Deletion	Chr9	19451399	19451442	43
Deletion	Chr3	20501617	20501634	17	LOC_Os03g36960
Deletion	Chr5	22353047	22353048	1
Deletion	Chr3	23834616	23834617	1
Deletion	Chr12	24120936	24120958	22	LOC_Os12g39180
Deletion	Chr7	24281799	24281808	9
Deletion	Chr2	24293001	24373000	80000	14
Deletion	Chr12	24805609	24805610	1
Deletion	Chr12	25225944	25225972	28
Deletion	Chr6	27331199	27331200	1
Deletion	Chr3	28911787	28911788	1
Deletion	Chr1	32876233	32876234	1
Deletion	Chr1	40813821	40813824	3	LOC_Os01g70470
Deletion	Chr1	42848079	42848084	5	LOC_Os01g73960

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	14631745	14631746	2
Insertion	Chr2	4781090	4781090	1
Insertion	Chr3	11487828	11487829	2
Insertion	Chr4	17505265	17505288	24	LOC_Os04g29440
Insertion	Chr6	3986112	3986177	66
Insertion	Chr7	22480488	22480488	1
Insertion	Chr8	15872777	15872778	2
Insertion	Chr8	17321864	17321864	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8582785	8590917	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9940221	Chr7	8590927	LOC_Os07g14970
Translocation	Chr9	13582068	Chr3	10613253
Translocation	Chr6	13699050	Chr1	2503882
Translocation	Chr8	27940341	Chr2	10385056	LOC_Os08g44400
Translocation	Chr8	27940726	Chr2	10385137	LOC_Os08g44400
Translocation	Chr8	28218761	Chr2	13833675
Translocation	Chr8	28219680	Chr2	13833709

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