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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19423741	T-G	HET	INTERGENIC
SBS	Chr1	24217868	G-A	HET	INTERGENIC
SBS	Chr1	27174484	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	32239752	C-G	HET	INTERGENIC
SBS	Chr2	445908	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g01800
SBS	Chr2	1586101	T-C	HET	INTERGENIC
SBS	Chr2	3122929	G-C	HET	INTERGENIC
SBS	Chr2	12587053	A-C	HET	INTRON
SBS	Chr3	15858766	T-C	HET	INTERGENIC
SBS	Chr3	17296132	G-A	HET	INTERGENIC
SBS	Chr3	20092480	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36220
SBS	Chr4	1973077	T-A	HET	INTERGENIC
SBS	Chr5	11099320	A-G	HET	INTERGENIC
SBS	Chr5	23469347	G-A	Homo	INTERGENIC
SBS	Chr6	14432041	G-A	HET	INTERGENIC
SBS	Chr7	24600784	A-T	HET	INTERGENIC
SBS	Chr8	4848105	A-G	HET	INTERGENIC
SBS	Chr8	7851405	G-A	HET	INTERGENIC
SBS	Chr8	19573837	C-A	HET	INTERGENIC
SBS	Chr9	8330241	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g14070
SBS	Chr9	11384178	C-T	Homo	INTERGENIC
SBS	Chr9	11384179	G-T	Homo	INTERGENIC
SBS	Chr9	19295020	C-T	HET	INTRON
SBS	Chr9	21768641	G-A	Homo	INTERGENIC
SBS	Chr10	1922344	C-G	HET	SPLICE_SITE_REGION
SBS	Chr10	2154234	G-A	HET	INTERGENIC
SBS	Chr10	8019349	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g15270
SBS	Chr11	8536077	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15140
SBS	Chr11	9614994	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17260
SBS	Chr11	9879572	G-A	HET	STOP_GAINED	LOC_Os11g17700
SBS	Chr12	12595661	C-T	Homo	INTERGENIC

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	624272	624280	8	LOC_Os05g02090
Deletion	Chr11	1457221	1457235	14	LOC_Os11g03730
Deletion	Chr2	2410030	2410046	16
Deletion	Chr6	2978525	2978527	2
Deletion	Chr12	5978130	5978134	4
Deletion	Chr10	6017972	6017980	8
Deletion	Chr8	6436580	6436585	5
Deletion	Chr11	6545001	6637000	92000	16
Deletion	Chr9	8013316	8013323	7	LOC_Os09g13700
Deletion	Chr5	10098689	10098690	1
Deletion	Chr2	14507749	14507750	1
Deletion	Chr5	14904706	14904707	1
Deletion	Chr9	14986065	14986097	32
Deletion	Chr6	15343436	15343437	1
Deletion	Chr10	15560498	15560499	1
Deletion	Chr5	15679269	15679271	2
Deletion	Chr9	15679512	15679528	16	LOC_Os09g26060
Deletion	Chr8	16689011	16689012	1
Deletion	Chr11	16875539	16875642	103
Deletion	Chr8	17019716	17019726	10
Deletion	Chr10	17243239	17243261	22
Deletion	Chr1	17459924	17459928	4	LOC_Os01g31870
Deletion	Chr4	18370853	18370854	1
Deletion	Chr9	18411311	18411312	1
Deletion	Chr1	18531869	18533479	1610	LOC_Os01g33684
Deletion	Chr5	18786033	18786034	1
Deletion	Chr1	19150045	19152713	2668
Deletion	Chr12	19601677	19601693	16
Deletion	Chr11	22674613	22674621	8	LOC_Os11g38300
Deletion	Chr11	23158571	23158584	13	LOC_Os11g38900
Deletion	Chr8	23270633	23270672	39
Deletion	Chr11	23852800	23852802	2
Deletion	Chr7	24593787	24599050	5263	LOC_Os07g41090
Deletion	Chr5	25984742	25984743	1
Deletion	Chr5	26037015	26037023	8	LOC_Os05g44786
Deletion	Chr8	26112270	26112278	8
Deletion	Chr2	26225216	26225220	4
Deletion	Chr1	26686045	26686049	4
Deletion	Chr1	30018652	30018663	11
Deletion	Chr3	31353242	31353247	5
Deletion	Chr4	32094001	32133000	39000	6
Deletion	Chr3	33806901	33806902	1
Deletion	Chr3	34675293	34675309	16	LOC_Os03g61040

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	6774226	6774226	1
Insertion	Chr1	17720118	17720119	2
Insertion	Chr1	40830887	40830917	31
Insertion	Chr1	41813672	41813685	14
Insertion	Chr7	636533	636533	1
Insertion	Chr7	9981329	9981340	12
Insertion	Chr8	3392974	3392975	2
Insertion	Chr8	21310945	21310945	1
Insertion	Chr10	21644630	21644637	8
Insertion	Chr12	229428	229429	2
Insertion	Chr12	13510415	13510428	14
Insertion	Chr12	24464631	24464631	1

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	15641014	Chr1	18531896	LOC_Os08g25700
Translocation	Chr8	15641018	Chr1	18533510	2
Translocation	Chr8	19803847	Chr4	31609413	LOC_Os04g53060
Translocation	Chr2	35001054	Chr1	11123455
Translocation	Chr2	35001061	Chr1	11115588

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