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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20110757	G-A	Homo	INTRON
SBS	Chr1	40637964	A-G	Homo	INTERGENIC
SBS	Chr10	20591183	G-T	HET	INTERGENIC
SBS	Chr11	25984422	C-A	HET	INTERGENIC
SBS	Chr12	10986281	G-A	HET	INTRON
SBS	Chr12	1414429	A-G	HET	INTRON
SBS	Chr12	376874	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g01620
SBS	Chr12	619279	A-T	HET	INTERGENIC
SBS	Chr2	11024664	C-T	HET	INTERGENIC
SBS	Chr3	24900882	A-G	HET	INTERGENIC
SBS	Chr3	24901335	T-A	HET	INTERGENIC
SBS	Chr3	30002624	C-A	HET	INTERGENIC
SBS	Chr4	15147868	T-A	HET	INTERGENIC
SBS	Chr4	3340129	G-T	HET	INTERGENIC
SBS	Chr4	8335874	C-T	HET	INTERGENIC
SBS	Chr5	22983528	G-A	Homo	INTERGENIC
SBS	Chr5	5342573	G-C	Homo	INTERGENIC
SBS	Chr6	13432528	A-G	HET	INTERGENIC
SBS	Chr6	17153314	G-A	HET	INTERGENIC
SBS	Chr6	23014506	A-C	HET	INTRON
SBS	Chr6	3604833	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g07490
SBS	Chr6	8192801	A-C	Homo	INTERGENIC
SBS	Chr7	27218674	T-C	Homo	INTRON
SBS	Chr8	10388715	C-T	HET	INTERGENIC
SBS	Chr8	14260323	C-T	HET	INTERGENIC
SBS	Chr8	16998793	G-A	HET	INTERGENIC
SBS	Chr8	21698337	G-A	Homo	INTERGENIC
SBS	Chr8	9418188	C-T	HET	INTERGENIC
SBS	Chr8	9418189	C-T	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	357176	357179	3	LOC_Os08g01600
Deletion	Chr5	1452171	1452174	3
Deletion	Chr4	3691326	3691327	1
Deletion	Chr5	5651820	5651822	2
Deletion	Chr12	6521555	6521556	1
Deletion	Chr10	7550559	7550560	1
Deletion	Chr11	8994783	8994785	2
Deletion	Chr4	11555128	11555129	1
Deletion	Chr9	14500522	14500523	1	LOC_Os09g24400
Deletion	Chr9	14901545	14901548	3
Deletion	Chr11	15003964	15003968	4
Deletion	Chr11	15101744	15101748	4
Deletion	Chr9	15786849	15786853	4
Deletion	Chr3	16083594	16083608	14
Deletion	Chr9	17144445	17144447	2
Deletion	Chr8	17569184	17569187	3
Deletion	Chr3	18084431	18084438	7
Deletion	Chr5	18753018	18753019	1
Deletion	Chr11	19145187	19145188	1
Deletion	Chr7	20525001	20570000	45000	5
Deletion	Chr8	22331102	22331108	6
Deletion	Chr4	22597458	22597459	1
Deletion	Chr4	23592555	23592557	2
Deletion	Chr2	25574814	25574819	5	LOC_Os02g42530
Deletion	Chr5	26980875	26981864	989
Deletion	Chr5	27055061	27055071	10
Deletion	Chr8	27115330	27115334	4
Deletion	Chr5	28840268	28842673	2405	LOC_Os05g50330
Deletion	Chr5	29346885	29346887	2
Deletion	Chr6	29781052	29781053	1	LOC_Os06g49130
Deletion	Chr3	31653441	31653442	1
Deletion	Chr1	36065053	36065064	11
Deletion	Chr1	38101269	38101272	3

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18546996	18546996	1
Insertion	Chr1	23063582	23063582	1
Insertion	Chr1	32641404	32641404	1
Insertion	Chr1	7515472	7515472	1
Insertion	Chr10	18373701	18373735	35
Insertion	Chr10	3661968	3661983	16
Insertion	Chr11	6664603	6664642	40
Insertion	Chr11	7505943	7505943	1
Insertion	Chr12	2626387	2626387	1
Insertion	Chr2	10241755	10241758	4
Insertion	Chr2	17950055	17950056	2	LOC_Os02g30190
Insertion	Chr2	19267013	19267014	2
Insertion	Chr2	7946735	7946735	1
Insertion	Chr3	25279434	25279435	2	LOC_Os03g44830
Insertion	Chr4	24679838	24679839	2
Insertion	Chr4	4114922	4114922	1
Insertion	Chr6	5960081	5960094	14
Insertion	Chr7	19091064	19091064	1
Insertion	Chr7	27780407	27780446	40
Insertion	Chr9	9341886	9341886	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	24913894	25395405	LOC_Os03g44980

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	19106111	Chr2	17890461	LOC_Os12g31748

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