Search Nipponbare

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	12943044	A-T	HET	SYNONYMOUS_CODING
SBS	Chr10	14765702	A-C	HET	INTERGENIC
SBS	Chr11	10378174	G-A	Homo	INTERGENIC
SBS	Chr11	14754728	C-T	Homo	INTERGENIC
SBS	Chr11	20833182	A-C	Homo	UTR_3_PRIME
SBS	Chr11	2165586	C-T	HET	INTERGENIC
SBS	Chr11	8538916	C-G	Homo	INTRON
SBS	Chr12	23269745	T-C	HET	INTRON
SBS	Chr12	3698090	T-G	HET	INTRON
SBS	Chr2	16352402	G-C	HET	INTERGENIC
SBS	Chr2	25961271	A-G	HET	INTERGENIC
SBS	Chr3	23460090	T-C	HET	INTERGENIC
SBS	Chr3	23481040	T-A	Homo	INTERGENIC
SBS	Chr4	15113004	C-T	HET	INTERGENIC
SBS	Chr4	32790046	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g55150
SBS	Chr4	6667854	C-G	HET	INTRON
SBS	Chr5	13500907	G-A	HET	INTERGENIC
SBS	Chr5	3097057	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	16435643	C-T	HET	INTERGENIC
SBS	Chr6	20424863	C-A	HET	INTERGENIC
SBS	Chr6	20983567	T-G	HET	INTERGENIC
SBS	Chr7	17484021	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g29740
SBS	Chr8	11002016	G-A	Homo	INTERGENIC
SBS	Chr8	12738816	T-A	HET	INTRON
SBS	Chr8	12738818	G-A	HET	INTRON
SBS	Chr8	15628480	C-T	HET	INTERGENIC
SBS	Chr8	17598255	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	6620200	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11260
SBS	Chr8	7170581	C-T	HET	INTRON
SBS	Chr8	9601011	G-A	Homo	INTERGENIC
SBS	Chr9	7323076	G-T	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	212814	212845	31	LOC_Os12g01355
Deletion	Chr7	1075018	1075029	11
Deletion	Chr9	2471214	2471217	3	LOC_Os09g04624
Deletion	Chr8	3482543	3482553	10	LOC_Os08g06310
Deletion	Chr5	6549539	6549540	1
Deletion	Chr9	7646001	7741000	95000	13
Deletion	Chr1	8554328	8561216	6888	2
Deletion	Chr8	8573775	8573779	4
Deletion	Chr6	11240301	11240303	2
Deletion	Chr10	11321264	11321270	6
Deletion	Chr5	11895391	11895393	2
Deletion	Chr3	12131436	12131440	4
Deletion	Chr4	13452412	13452415	3	LOC_Os04g23520
Deletion	Chr9	14422730	14422746	16
Deletion	Chr6	15782775	15782788	13	LOC_Os06g27860
Deletion	Chr1	17118821	17118824	3
Deletion	Chr10	18111841	18111852	11
Deletion	Chr7	18833320	18833321	1
Deletion	Chr1	21174926	21174938	12
Deletion	Chr4	21368078	21368079	1
Deletion	Chr2	21839456	21840286	830
Deletion	Chr2	22191555	22191563	8
Deletion	Chr3	25505733	25505734	1	LOC_Os03g45170
Deletion	Chr12	26359280	26359281	1	LOC_Os12g42410
Deletion	Chr3	26499767	26499768	1	LOC_Os03g46840
Deletion	Chr7	27748554	27748555	1
Deletion	Chr6	30031947	30031959	12
Deletion	Chr4	34600183	34600186	3
Deletion	Chr1	43264101	43264108	7

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	37561525	37561525	1
Insertion	Chr11	19615789	19615818	30
Insertion	Chr11	22634284	22634285	2
Insertion	Chr2	21191440	21191440	1
Insertion	Chr2	33915860	33915860	1
Insertion	Chr3	24715476	24715517	42
Insertion	Chr3	34963911	34963911	1	LOC_Os03g61690
Insertion	Chr4	26319012	26319012	1
Insertion	Chr4	9567564	9567575	12
Insertion	Chr6	6623458	6623458	1
Insertion	Chr7	11810010	11810060	51
Insertion	Chr7	3555716	3555733	18
Insertion	Chr8	11214525	11214525	1
Insertion	Chr8	17189354	17189354	1
Insertion	Chr9	16695194	16695194	1
Insertion	Chr9	3239974	3239974	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13001335	15255404

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	973000	Chr5	12352448	LOC_Os05g20990
Translocation	Chr8	973009	Chr5	12352213	LOC_Os05g20990
Translocation	Chr5	12352537	Chr2	4262352	LOC_Os05g20990
Translocation	Chr5	12353491	Chr2	4262307	LOC_Os05g20990
Translocation	Chr10	12942940	Chr2	21839457	LOC_Os10g25110
Translocation	Chr6	29650647	Chr2	32946923	LOC_Os02g53780
Translocation	Chr6	29650648	Chr2	32946924	LOC_Os02g53780

Main menu