Search Results

Mutant Information

Mutant Name	FN1736-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1736-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2113400	T-C	Homo
SBS	Chr1	34506450	G-T	HET
SBS	Chr1	35177844	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60850
SBS	Chr1	36431578	G-A	HET
SBS	Chr2	15108203	T-C	Homo
SBS	Chr2	27901341	C-G	Homo
SBS	Chr3	14053017	C-T	Homo
SBS	Chr4	1756902	T-G	HET
SBS	Chr4	2808644	A-G	HET
SBS	Chr4	3002231	G-C	HET
SBS	Chr4	13901420	C-T	Homo
SBS	Chr7	2361023	C-T	Homo
SBS	Chr7	5676196	G-A	HET
SBS	Chr7	14443278	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25290
SBS	Chr7	16619100	T-A	Homo
SBS	Chr7	22264094	C-T	Homo
SBS	Chr8	1791463	G-T	HET
SBS	Chr8	23134740	G-A	HET
SBS	Chr12	8975838	A-G	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	347225	347237	12
Deletion	Chr5	5218065	5218066	1	LOC_Os05g09340
Deletion	Chr2	6261239	6261244	5	LOC_Os02g12060
Deletion	Chr12	7527931	7527933	2
Deletion	Chr12	7786391	7786395	4
Deletion	Chr6	11497693	11497716	23
Deletion	Chr7	12885336	12885337	1	LOC_Os07g22850
Deletion	Chr6	14756001	14764000	7999	2
Deletion	Chr7	14959981	14959983	2
Deletion	Chr7	16345776	16345777	1	LOC_Os07g28030
Deletion	Chr11	19488207	19488215	8
Deletion	Chr12	20119366	20119367	1
Deletion	Chr2	20418337	20418349	12
Deletion	Chr8	23848012	23848013	1	LOC_Os08g37630
Deletion	Chr8	25966611	25966619	8
Deletion	Chr6	26311332	26311340	8
Deletion	Chr4	28224821	28224822	1
Deletion	Chr2	31754672	31754673	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	43134513	43134518	6
Insertion	Chr6	5626268	5626269	2
Insertion	Chr11	9639629	9639630	2
Insertion	Chr2	10476797	10476798	2
Insertion	Chr4	21478905	21478905	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	991872	991976	LOC_Os02g02670
Inversion	Chr3	6525553	6525868
Inversion	Chr2	24694673	24695033
Inversion	Chr2	28876951	28877293

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	6132508	Chr1	13836762
Translocation	Chr10	11794037	Chr7	11371319	2
Translocation	Chr10	11794053	Chr7	11371147	2
Translocation	Chr12	21541391	Chr11	1259272
Translocation	Chr12	25414585	Chr4	16577077	2
Translocation	Chr11	27831690	Chr7	3937360	LOC_Os11g45990