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| Mutant Information |
|---|
| Mutant Name | FN185-2_3_4 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN185-2_3_4 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6875482 | C-T | HET | ||
| SBS | Chr10 | 16295470 | G-A | HET | ||
| SBS | Chr10 | 7935520 | C-T | HET | ||
| SBS | Chr10 | 8034398 | T-C | HET | ||
| SBS | Chr12 | 9464220 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g16520 |
| SBS | Chr2 | 12673957 | C-T | HET | ||
| SBS | Chr2 | 17747177 | G-A | HET | ||
| SBS | Chr2 | 26926306 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g44490 |
| SBS | Chr2 | 8185788 | C-A | HET | ||
| SBS | Chr3 | 13144159 | C-A | HET | ||
| SBS | Chr4 | 10867376 | G-A | HET | ||
| SBS | Chr4 | 11585015 | G-A | HET | ||
| SBS | Chr4 | 13625755 | G-A | HET | ||
| SBS | Chr4 | 18605363 | C-T | HET | ||
| SBS | Chr5 | 25116227 | C-A | HET | ||
| SBS | Chr5 | 25116228 | C-A | HET | ||
| SBS | Chr6 | 2101927 | T-C | HET | ||
| SBS | Chr7 | 13138855 | G-A | HET | ||
| SBS | Chr7 | 25545724 | G-T | Homo | ||
| SBS | Chr8 | 23244658 | G-C | HET | ||
| SBS | Chr8 | 8568528 | A-C | HET | ||
| SBS | Chr9 | 11072426 | G-A | HET | ||
| SBS | Chr9 | 13726083 | T-C | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 72697 | 73404 | 707 | |
| Deletion | Chr7 | 400637 | 400648 | 11 | |
| Deletion | Chr12 | 2497418 | 2497420 | 2 | |
| Deletion | Chr8 | 3466713 | 3466714 | 1 | |
| Deletion | Chr1 | 4453828 | 4453836 | 8 | LOC_Os01g08870 |
| Deletion | Chr2 | 7952350 | 7952359 | 9 | LOC_Os02g14450 |
| Deletion | Chr8 | 10747831 | 10747940 | 109 | |
| Deletion | Chr3 | 11308835 | 11308837 | 2 | |
| Deletion | Chr10 | 18504411 | 18504412 | 1 | |
| Deletion | Chr5 | 24486564 | 24486565 | 1 | |
| Deletion | Chr8 | 25442942 | 25442954 | 12 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 28135120 | 28135123 | 4 | |
| Insertion | Chr11 | 3979219 | 3979221 | 3 |
Inversions: 8
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 4135195 | Chr1 | 2776831 | LOC_Os03g08100 |
| Translocation | Chr3 | 15064011 | Chr1 | 7745665 | 2 |
| Translocation | Chr6 | 19269673 | Chr2 | 16667811 | |
| Translocation | Chr6 | 20990400 | Chr5 | 23747225 | 2 |
| Translocation | Chr6 | 20995290 | Chr5 | 23716334 | |
| Translocation | Chr4 | 21151885 | Chr1 | 35915194 | |
| Translocation | Chr4 | 21157991 | Chr1 | 35915209 | |
| Translocation | Chr11 | 23449558 | Chr8 | 16435263 | |
| Translocation | Chr12 | 25053198 | Chr4 | 29687185 | 2 |