Search Results
| Mutant Information |
|---|
| Mutant Name | FN1916 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1916 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 35842716 | C-T | HET | ||
| SBS | Chr11 | 5815079 | C-A | HET | ||
| SBS | Chr12 | 10401876 | C-A | Homo | ||
| SBS | Chr12 | 10401877 | C-A | Homo | ||
| SBS | Chr12 | 10401878 | C-T | Homo | ||
| SBS | Chr12 | 11107699 | C-T | Homo | ||
| SBS | Chr2 | 525884 | G-T | HET | ||
| SBS | Chr2 | 25795201 | A-C | HET | ||
| SBS | Chr2 | 21360200 | G-A | Homo | ||
| SBS | Chr2 | 35558086 | G-T | Homo | LOC_Os02g58090 | |
| SBS | Chr3 | 31922707 | G-A | HET | LOC_Os03g56050 | |
| SBS | Chr3 | 2774557 | G-A | Homo | ||
| SBS | Chr3 | 2774558 | G-A | Homo | ||
| SBS | Chr3 | 2774561 | G-C | Homo | ||
| SBS | Chr3 | 10955100 | A-G | Homo | ||
| SBS | Chr4 | 5177901 | T-A | HET | ||
| SBS | Chr4 | 6092067 | C-A | HET | ||
| SBS | Chr4 | 7295672 | G-A | HET | ||
| SBS | Chr4 | 13687588 | G-A | HET | LOC_Os04g23930 | |
| SBS | Chr4 | 7398065 | G-A | Homo | ||
| SBS | Chr4 | 14969301 | G-A | Homo | ||
| SBS | Chr4 | 31384340 | T-A | Homo | ||
| SBS | Chr5 | 6159045 | T-A | HET | ||
| SBS | Chr5 | 25695272 | T-C | HET | ||
| SBS | Chr5 | 4082372 | C-T | Homo | ||
| SBS | Chr6 | 11580668 | C-T | HET | ||
| SBS | Chr6 | 21047314 | G-C | HET | ||
| SBS | Chr7 | 8178475 | G-A | Homo | ||
| SBS | Chr8 | 12970601 | A-G | HET | ||
| SBS | Chr8 | 14252467 | A-G | HET | LOC_Os08g23540 | |
| SBS | Chr8 | 15708588 | G-A | HET | ||
| SBS | Chr8 | 16512848 | C-T | HET | LOC_Os08g27020 | |
| SBS | Chr9 | 942550 | C-A | Homo | ||
| SBS | Chr9 | 20229561 | C-T | Homo |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 942536 | 942538 | 2 | |
| Deletion | Chr2 | 1548824 | 1559195 | 10371 | 2 |
| Deletion | Chr8 | 3246204 | 3246222 | 18 | |
| Deletion | Chr3 | 4576401 | 4624001 | 47600 | 7 |
| Deletion | Chr4 | 5656844 | 5656846 | 2 | |
| Deletion | Chr5 | 9309157 | 9309171 | 14 | |
| Deletion | Chr11 | 10875065 | 10875066 | 1 | |
| Deletion | Chr11 | 11585050 | 11585053 | 3 | |
| Deletion | Chr4 | 15906401 | 16028101 | 121700 | 17 |
| Deletion | Chr10 | 16213409 | 16213410 | 1 | |
| Deletion | Chr4 | 19921903 | 19921918 | 15 | LOC_Os04g32960 |
| Deletion | Chr10 | 21204413 | 21204422 | 9 | |
| Deletion | Chr7 | 21217452 | 21217464 | 12 | |
| Deletion | Chr6 | 24412833 | 24412835 | 2 | |
| Deletion | Chr5 | 24666802 | 24666811 | 9 | |
| Deletion | Chr1 | 27241833 | 27241837 | 4 | |
| Deletion | Chr8 | 28079816 | 28079817 | 1 | |
| Deletion | Chr1 | 29318421 | 29318425 | 4 | |
| Deletion | Chr2 | 29927830 | 29927842 | 12 | LOC_Os02g48940 |
| Deletion | Chr3 | 30393179 | 30393194 | 15 | |
| Deletion | Chr3 | 32868859 | 32873072 | 4213 | 2 |
| Deletion | Chr4 | 34568114 | 34568125 | 11 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 20459835 | 20459836 | 2 | |
| Insertion | Chr9 | 18261701 | 18261702 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 15906425 | 16679432 | LOC_Os04g28220 |
| Inversion | Chr4 | 16028086 | 16679438 |
No Translocation