Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20060552	T-C	Homo
SBS	Chr1	24368722	T-A	HET
SBS	Chr1	25159238	C-T	HET
SBS	Chr1	26173327	C-G	HET
SBS	Chr1	40366243	G-A	HET
SBS	Chr1	40830704	T-A	HET
SBS	Chr1	40830705	C-A	HET
SBS	Chr1	40830706	C-A	HET
SBS	Chr1	41526460	G-A	HET
SBS	Chr1	41567003	C-T	HET
SBS	Chr1	41567004	C-T	HET
SBS	Chr1	9928046	C-T	HET
SBS	Chr10	21881093	T-G	HET
SBS	Chr12	15685050	T-C	Homo
SBS	Chr12	20047198	A-G	HET
SBS	Chr12	21267616	T-A	HET
SBS	Chr12	5032231	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g09570
SBS	Chr2	18742844	C-T	HET
SBS	Chr2	29815349	T-A	HET
SBS	Chr2	4496147	C-A	Homo
SBS	Chr4	21548143	G-A	HET
SBS	Chr4	28313879	G-C	HET
SBS	Chr4	9339972	C-T	Homo
SBS	Chr5	14230216	T-G	HET
SBS	Chr5	16890867	T-A	Homo
SBS	Chr5	5529069	T-A	Homo
SBS	Chr6	5392882	A-G	HET
SBS	Chr7	2817353	A-T	Homo
SBS	Chr8	20951799	G-A	HET
SBS	Chr8	24595415	C-T	HET
SBS	Chr8	26182213	C-T	HET
SBS	Chr8	3016737	G-A	HET
SBS	Chr8	4675485	A-T	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4004575	4004582	7
Deletion	Chr9	7253929	7253998	69
Deletion	Chr8	9575926	9575931	5
Deletion	Chr11	10931749	10931756	7
Deletion	Chr12	11220650	11220655	5
Deletion	Chr3	11231800	11231813	13
Deletion	Chr11	16041001	16192000	150999	25
Deletion	Chr8	16250392	16250401	9
Deletion	Chr5	18939766	18939772	6
Deletion	Chr2	18986930	18986932	2
Deletion	Chr12	19181003	19181011	8
Deletion	Chr5	24488001	24611000	122999	24
Deletion	Chr2	24673407	24673409	2
Deletion	Chr1	26452535	26452538	3	LOC_Os01g46500
Deletion	Chr5	29579518	29579526	8	LOC_Os05g51570

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	15973461	15973461	1
Insertion	Chr1	9928033	9928035	3
Insertion	Chr10	17172237	17172237	1
Insertion	Chr11	11558331	11558332	2
Insertion	Chr11	8917513	8917516	4
Insertion	Chr4	34505648	34505653	6
Insertion	Chr5	20345564	20345594	31
Insertion	Chr5	28844784	28844787	4
Insertion	Chr8	9184146	9184148	3

Inversions: 11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	296615	296977
Inversion	Chr2	1106859	1107108	LOC_Os02g02880
Inversion	Chr10	7240600	7241047
Inversion	Chr3	9278566	9278899	LOC_Os03g16750
Inversion	Chr7	10111037	10444803	LOC_Os07g17180
Inversion	Chr7	10111043	10444801	LOC_Os07g17180
Inversion	Chr11	15835824	15836109
Inversion	Chr1	24073124	24073380	LOC_Os01g42370
Inversion	Chr6	26956797	26956975	2
Inversion	Chr3	28535204	28535395	LOC_Os03g50010
Inversion	Chr7	28540935	28541073	LOC_Os07g47790

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	4247525	Chr3	25764499	LOC_Os04g07980
Translocation	Chr7	9358254	Chr4	794205	2
Translocation	Chr4	11279438	Chr3	32469644	LOC_Os04g20220

Main menu