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Mutant Information

Mutant Name	FN2103-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2103-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr11	11369445	C-T	Homo
SBS	Chr11	19291180	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g32660
SBS	Chr11	20710328	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35320
SBS	Chr11	24237317	T-A	Homo
SBS	Chr11	2557413	C-T	HET
SBS	Chr12	24211774	A-C	Homo
SBS	Chr3	24558884	C-T	Homo
SBS	Chr3	28868856	T-C	HET
SBS	Chr4	25527492	G-T	Homo
SBS	Chr5	24448941	C-A	HET
SBS	Chr5	5379369	C-T	Homo
SBS	Chr6	21361463	A-G	HET
SBS	Chr6	25857104	C-A	HET
SBS	Chr7	10442791	T-G	HET
SBS	Chr7	26058434	G-A	Homo
SBS	Chr7	9314642	G-C	HET
SBS	Chr8	2398123	G-T	HET
SBS	Chr9	3348954	C-T	Homo
SBS	Chr9	9607758	T-C	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3182771	3182773	2
Deletion	Chr1	4815731	4816092	361
Deletion	Chr1	7074144	7074150	6
Deletion	Chr12	9277001	9291000	13999	4
Deletion	Chr8	10307829	10307831	2
Deletion	Chr3	10429192	10429194	2
Deletion	Chr9	11399001	11418000	18999	3
Deletion	Chr10	15617410	15617418	8
Deletion	Chr7	19566475	19566478	3
Deletion	Chr12	23693715	23693717	2
Deletion	Chr11	23923214	23923216	2
Deletion	Chr4	25926518	25926520	2
Deletion	Chr4	30006389	30006398	9

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15002977	15002977	1
Insertion	Chr1	19749394	19749394	1
Insertion	Chr10	15917270	15917285	16
Insertion	Chr11	25113040	25113073	34
Insertion	Chr12	23080063	23080065	3
Insertion	Chr2	34287786	34287789	4
Insertion	Chr5	13344357	13344357	1
Insertion	Chr7	17968407	17968407	1	LOC_Os07g30360
Insertion	Chr7	27597848	27597850	3

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1471081	2029326
Inversion	Chr5	2143169	2143516
Inversion	Chr12	5099960	5100173	2
Inversion	Chr8	6367543	6940427	LOC_Os08g10810
Inversion	Chr12	8146016	8146553
Inversion	Chr1	10311786	10312170
Inversion	Chr4	13661370	13661470
Inversion	Chr9	15578224	15578328	LOC_Os09g25934
Inversion	Chr11	16376707	17008514
Inversion	Chr5	22561152	22561424
Inversion	Chr11	27167591	27193426	LOC_Os11g44890
Inversion	Chr11	27167656	27193433	LOC_Os11g44890

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	368077	Chr5	8762234	2
Translocation	Chr9	15057902	Chr6	4745710
Translocation	Chr7	17774195	Chr6	13729353	LOC_Os07g30120
Translocation	Chr7	24175386	Chr1	35040626	2
Translocation	Chr7	24175792	Chr1	35040452	2
Translocation	Chr2	28932022	Chr1	15785582