Search Results
| Mutant Information |
|---|
| Mutant Name | FN2104-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2104-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8832118 | A-T | Homo | ||
| SBS | Chr1 | 43235841 | C-A | HET | ||
| SBS | Chr2 | 6943525 | A-T | Homo | ||
| SBS | Chr2 | 9047126 | G-C | Homo | ||
| SBS | Chr2 | 13016683 | A-T | HET | ||
| SBS | Chr2 | 24934634 | T-C | Homo | ||
| SBS | Chr3 | 20289312 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g36590 |
| SBS | Chr3 | 22551285 | C-T | HET | ||
| SBS | Chr3 | 24930321 | T-C | HET | ||
| SBS | Chr4 | 10432207 | G-A | HET | ||
| SBS | Chr4 | 22333169 | G-A | Homo | ||
| SBS | Chr4 | 33639616 | T-A | Homo | ||
| SBS | Chr5 | 4074540 | C-T | Homo | ||
| SBS | Chr5 | 16322132 | C-T | HET | ||
| SBS | Chr6 | 11404224 | A-G | HET | ||
| SBS | Chr7 | 8679769 | T-A | Homo | ||
| SBS | Chr9 | 14200828 | C-T | HET | ||
| SBS | Chr9 | 18937864 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g31442 |
| SBS | Chr10 | 12225739 | C-T | Homo | ||
| SBS | Chr11 | 13238637 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g23020 |
| SBS | Chr11 | 13238638 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g23020 |
| SBS | Chr11 | 22376903 | A-G | HET | ||
| SBS | Chr12 | 1260490 | C-A | HET |
Deletions: 7
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 13737637 | 13737637 | 1 | |
| Insertion | Chr5 | 4740328 | 4740357 | 30 | LOC_Os05g08660 |
| Insertion | Chr6 | 25225861 | 25225861 | 1 | |
| Insertion | Chr7 | 17960758 | 17960758 | 1 | |
| Insertion | Chr8 | 27627839 | 27627839 | 1 | |
| Insertion | Chr12 | 13933142 | 13933142 | 1 | |
| Insertion | Chr12 | 19004941 | 19004941 | 1 | |
| Insertion | Chr12 | 20599922 | 20599923 | 2 |
Inversions: 35
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 1037243 | 1037438 | LOC_Os02g02740 |
| Inversion | Chr9 | 1782685 | 1782928 | LOC_Os09g03600 |
| Inversion | Chr6 | 2583338 | 2583635 | LOC_Os06g05710 |
| Inversion | Chr3 | 3734000 | 3734149 | |
| Inversion | Chr6 | 5250050 | 5250176 | LOC_Os06g10230 |
| Inversion | Chr6 | 6497517 | 6497659 | LOC_Os06g12150 |
| Inversion | Chr3 | 7737082 | 7737314 | |
| Inversion | Chr8 | 8435173 | 8435455 | |
| Inversion | Chr1 | 10892990 | 10893248 | LOC_Os01g19260 |
| Inversion | Chr1 | 12176868 | 12177234 | |
| Inversion | Chr4 | 13141160 | 13141433 | LOC_Os04g23120 |
| Inversion | Chr12 | 13816380 | 13816672 | LOC_Os12g24250 |
| Inversion | Chr2 | 14624816 | 14625355 | |
| Inversion | Chr9 | 14845365 | 14845597 | LOC_Os09g24870 |
| Inversion | Chr12 | 14849872 | 14850093 | |
| Inversion | Chr10 | 15241881 | 15242097 | |
| Inversion | Chr5 | 16294953 | 16295143 | LOC_Os05g27920 |
| Inversion | Chr5 | 16700717 | 16700903 | LOC_Os05g28510 |
| Inversion | Chr9 | 17538769 | 17539075 | |
| Inversion | Chr6 | 18082987 | 18083186 | LOC_Os06g31100 |
| Inversion | Chr1 | 18720641 | 18720843 | LOC_Os01g34010 |
| Inversion | Chr3 | 21787461 | 21787597 | LOC_Os03g39230 |
| Inversion | Chr3 | 22016358 | 22016879 | LOC_Os03g39640 |
| Inversion | Chr10 | 22431836 | 22432023 | |
| Inversion | Chr4 | 23229085 | 23229304 | LOC_Os04g39090 |
| Inversion | Chr1 | 24003100 | 24003317 | |
| Inversion | Chr12 | 25980820 | 25981055 | LOC_Os12g41910 |
| Inversion | Chr5 | 27381677 | 27381956 | LOC_Os05g47780 |
| Inversion | Chr2 | 27646240 | 27646650 | |
| Inversion | Chr1 | 28474732 | 28475154 | |
| Inversion | Chr2 | 29674734 | 29675017 | |
| Inversion | Chr6 | 31103755 | 31103970 | |
| Inversion | Chr2 | 33729036 | 33729576 | |
| Inversion | Chr1 | 34863432 | 34863649 | LOC_Os01g60270 |
| Inversion | Chr1 | 38670377 | 38670619 |
Translocations: 18
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1472788 | Chr6 | 7782069 | 2 |
| Translocation | Chr6 | 2252644 | Chr3 | 15949514 | LOC_Os06g05100 |
| Translocation | Chr6 | 2252654 | Chr3 | 15950358 | 2 |
| Translocation | Chr9 | 3415960 | Chr8 | 9521823 | LOC_Os09g07050 |
| Translocation | Chr4 | 3844939 | Chr3 | 13382505 | |
| Translocation | Chr10 | 4515244 | Chr3 | 25289541 | LOC_Os10g08340 |
| Translocation | Chr7 | 6132507 | Chr1 | 13836809 | |
| Translocation | Chr7 | 11859716 | Chr6 | 2921412 | |
| Translocation | Chr8 | 17546258 | Chr4 | 12566278 | |
| Translocation | Chr6 | 19203590 | Chr3 | 29982752 | |
| Translocation | Chr11 | 19817821 | Chr8 | 19393156 | |
| Translocation | Chr12 | 22800133 | Chr10 | 13461318 | 2 |
| Translocation | Chr11 | 24566669 | Chr1 | 14049322 | 2 |
| Translocation | Chr11 | 24566675 | Chr10 | 2436160 | LOC_Os11g41034 |
| Translocation | Chr3 | 25354374 | Chr2 | 28442153 | |
| Translocation | Chr3 | 25354383 | Chr1 | 32550341 | |
| Translocation | Chr8 | 26568636 | Chr4 | 24469434 | |
| Translocation | Chr3 | 29712903 | Chr2 | 11143997 | 2 |