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| Mutant Information |
|---|
| Mutant Name | FN2105-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2105-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17220971 | C-A | Homo | ||
| SBS | Chr1 | 30778627 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g53600 |
| SBS | Chr1 | 38372520 | G-A | HET | ||
| SBS | Chr10 | 11897729 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g22890 |
| SBS | Chr11 | 14678428 | C-T | Homo | ||
| SBS | Chr11 | 8295802 | G-A | HET | STOP_GAINED | LOC_Os11g14710 |
| SBS | Chr11 | 8312778 | T-A | HET | ||
| SBS | Chr11 | 8312779 | C-T | HET | ||
| SBS | Chr12 | 22256902 | G-A | HET | ||
| SBS | Chr2 | 32335054 | T-G | HET | ||
| SBS | Chr2 | 7075629 | C-T | Homo | ||
| SBS | Chr3 | 17613515 | A-G | HET | ||
| SBS | Chr3 | 27793060 | C-A | HET | ||
| SBS | Chr3 | 34293094 | A-G | HET | ||
| SBS | Chr5 | 19946934 | T-C | Homo | ||
| SBS | Chr5 | 548134 | G-T | Homo | ||
| SBS | Chr6 | 15793135 | C-A | HET | ||
| SBS | Chr6 | 17348645 | G-T | Homo | ||
| SBS | Chr6 | 27837305 | A-T | HET | ||
| SBS | Chr7 | 14146596 | A-G | HET | ||
| SBS | Chr7 | 26685263 | T-C | HET | ||
| SBS | Chr7 | 7400517 | G-C | HET | ||
| SBS | Chr8 | 19428948 | G-A | HET | ||
| SBS | Chr8 | 21834904 | C-T | HET | ||
| SBS | Chr9 | 11102139 | C-A | HET | ||
| SBS | Chr9 | 4659198 | C-T | Homo | ||
| SBS | Chr9 | 5745068 | A-G | Homo |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 8246260 | 8246263 | 3 | |
| Deletion | Chr9 | 9678058 | 9678061 | 3 | |
| Deletion | Chr1 | 13873512 | 13873513 | 1 | LOC_Os01g24630 |
| Deletion | Chr1 | 19989141 | 19989150 | 9 | LOC_Os01g36130 |
| Deletion | Chr6 | 21695000 | 21695001 | 1 | |
| Deletion | Chr2 | 23340124 | 23340125 | 1 | |
| Deletion | Chr11 | 26728041 | 26728043 | 2 | |
| Deletion | Chr3 | 27352905 | 27352906 | 1 | |
| Deletion | Chr5 | 28622286 | 28622292 | 6 |
Insertions: 7
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 887577 | Chr5 | 29206729 | LOC_Os10g02430 |
| Translocation | Chr10 | 887586 | Chr5 | 29247810 | 2 |
| Translocation | Chr9 | 7742322 | Chr1 | 22939868 | LOC_Os09g13400 |
| Translocation | Chr5 | 20684297 | Chr1 | 38624295 | |
| Translocation | Chr11 | 24267171 | Chr10 | 12297753 | 2 |
| Translocation | Chr7 | 25290578 | Chr6 | 30259663 | LOC_Os07g42260 |
| Translocation | Chr11 | 27838028 | Chr1 | 33304489 | 2 |