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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17833819	G-T	Homo
SBS	Chr1	20335370	C-T	Homo
SBS	Chr1	23044397	T-G	HET
SBS	Chr1	23558315	G-A	Homo
SBS	Chr1	24149914	A-G	HET
SBS	Chr1	38653332	G-T	HET
SBS	Chr1	618276	C-T	Homo
SBS	Chr11	11477660	G-A	Homo
SBS	Chr11	2292953	A-T	HET
SBS	Chr12	10558190	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18300
SBS	Chr12	115558	G-T	HET
SBS	Chr12	13311053	C-A	Homo
SBS	Chr12	20728639	C-T	HET
SBS	Chr12	21864857	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35880
SBS	Chr2	14573277	C-A	HET
SBS	Chr2	14573278	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25100
SBS	Chr2	15380083	C-T	HET
SBS	Chr2	29347470	C-T	Homo
SBS	Chr2	32764606	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr2	33875706	A-T	HET
SBS	Chr3	1337746	T-C	Homo
SBS	Chr3	16213515	G-T	HET
SBS	Chr3	16633641	G-A	Homo
SBS	Chr3	19948924	G-A	HET
SBS	Chr3	26082153	G-T	HET
SBS	Chr4	30007425	A-T	HET
SBS	Chr5	17707760	A-G	Homo
SBS	Chr5	19341160	A-G	Homo
SBS	Chr5	27872508	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g48620
SBS	Chr5	2982108	C-T	Homo
SBS	Chr6	12369862	C-T	HET
SBS	Chr6	12860247	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g22150
SBS	Chr6	16196322	A-T	HET
SBS	Chr6	17634657	C-T	HET
SBS	Chr6	21683045	A-T	HET
SBS	Chr6	5111272	G-A	Homo
SBS	Chr8	11873867	A-G	HET
SBS	Chr9	11844025	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19790
SBS	Chr9	11844026	C-A	HET
SBS	Chr9	1261486	G-A	Homo
SBS	Chr9	5495450	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	4161301	4161302	1
Deletion	Chr6	4933001	4962000	28999	4
Deletion	Chr9	5153779	5153781	2
Deletion	Chr5	13827323	13827324	1
Deletion	Chr5	20685254	20685256	2
Deletion	Chr7	24290681	24290687	6
Deletion	Chr3	25088395	25088413	18
Deletion	Chr2	28611725	28611729	4
Deletion	Chr4	35074674	35074677	3

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	27968077	27968096	20
Insertion	Chr10	3190532	3190532	1
Insertion	Chr10	4461373	4461374	2
Insertion	Chr2	33351082	33351083	2
Insertion	Chr3	105303	105304	2
Insertion	Chr3	29440761	29440762	2
Insertion	Chr9	15428300	15428301	2

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	693384	693803	LOC_Os12g02230
Inversion	Chr6	2912470	2912849
Inversion	Chr11	3933441	3933620
Inversion	Chr3	7048378	7048821	LOC_Os03g13040
Inversion	Chr6	13503543	13503902
Inversion	Chr6	21589003	21589411
Inversion	Chr8	24841927	24842427	LOC_Os08g39310
Inversion	Chr12	25721072	25721456
Inversion	Chr1	35487686	35488109

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2459500	Chr8	5973131	2
Translocation	Chr8	26132308	Chr2	4726018
Translocation	Chr8	26136924	Chr2	4725998	2
Translocation	Chr11	27797915	Chr5	23589673	2

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