Search Results
| Mutant Information |
|---|
| Mutant Name | FN2119-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2119-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21591988 | C-A | HET | ||
| SBS | Chr1 | 27874268 | G-A | Homo | ||
| SBS | Chr1 | 30956952 | A-C | Homo | ||
| SBS | Chr2 | 7044554 | G-A | HET | ||
| SBS | Chr2 | 12704511 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g21400 |
| SBS | Chr2 | 17682859 | G-A | HET | ||
| SBS | Chr3 | 14545063 | C-T | HET | ||
| SBS | Chr3 | 25460195 | A-T | HET | ||
| SBS | Chr3 | 25808276 | C-T | Homo | ||
| SBS | Chr5 | 21602770 | C-T | Homo | ||
| SBS | Chr5 | 21602772 | C-T | Homo | ||
| SBS | Chr6 | 2421030 | C-T | HET | ||
| SBS | Chr6 | 10451712 | C-T | HET | ||
| SBS | Chr7 | 304468 | A-T | Homo | ||
| SBS | Chr7 | 369519 | C-T | Homo | ||
| SBS | Chr7 | 6543809 | A-G | Homo | ||
| SBS | Chr8 | 91418 | T-C | HET | ||
| SBS | Chr8 | 3903898 | A-G | Homo | ||
| SBS | Chr8 | 22466695 | C-G | HET | ||
| SBS | Chr8 | 22678324 | C-A | HET | ||
| SBS | Chr8 | 25838887 | G-A | HET | ||
| SBS | Chr9 | 19016998 | G-C | HET | ||
| SBS | Chr10 | 8325010 | A-T | HET | ||
| SBS | Chr11 | 7587452 | G-A | HET | ||
| SBS | Chr11 | 15180057 | G-A | Homo | ||
| SBS | Chr12 | 17312032 | G-A | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1499577 | 1499583 | 6 | |
| Deletion | Chr2 | 10670809 | 10670820 | 11 | |
| Deletion | Chr4 | 12566487 | 12566488 | 1 | |
| Deletion | Chr3 | 13475063 | 13475064 | 1 | |
| Deletion | Chr11 | 14381203 | 14381204 | 1 | |
| Deletion | Chr1 | 16601258 | 16601261 | 3 | |
| Deletion | Chr8 | 18622013 | 18622014 | 1 | |
| Deletion | Chr7 | 21054523 | 21054526 | 3 | LOC_Os07g35160 |
| Deletion | Chr11 | 24149751 | 24149768 | 17 | |
| Deletion | Chr4 | 24931290 | 24931292 | 2 | |
| Deletion | Chr2 | 26123001 | 26143000 | 19999 | 2 |
| Deletion | Chr1 | 26447989 | 26447993 | 4 | |
| Deletion | Chr2 | 35723684 | 35723685 | 1 | |
| Deletion | Chr1 | 42166637 | 42166639 | 2 |
Insertions: 5
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 11350272 | 11350591 | |
| Inversion | Chr3 | 13774990 | 13775314 | |
| Inversion | Chr2 | 26126262 | 26244353 | 2 |
| Inversion | Chr2 | 26140930 | 26244357 | 2 |
| Inversion | Chr1 | 28581986 | 28582343 | LOC_Os01g49760 |
| Inversion | Chr1 | 29932562 | 29932859 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 3514268 | Chr6 | 20597219 | LOC_Os08g06344 |
| Translocation | Chr8 | 3516759 | Chr6 | 20597207 | LOC_Os08g06344 |
| Translocation | Chr11 | 5009698 | Chr1 | 36411666 | 2 |
| Translocation | Chr10 | 15383272 | Chr4 | 16289286 | |
| Translocation | Chr6 | 16341913 | Chr1 | 40950946 | |
| Translocation | Chr11 | 17008248 | Chr4 | 5000308 | 2 |
| Translocation | Chr4 | 17926761 | Chr3 | 9616514 |