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| Mutant Information |
|---|
| Mutant Name | FN2120-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2120-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12660913 | G-A | Homo | ||
| SBS | Chr1 | 1647784 | A-T | Homo | ||
| SBS | Chr1 | 20667853 | G-T | Homo | ||
| SBS | Chr1 | 40545369 | A-C | Homo | ||
| SBS | Chr10 | 12519829 | G-A | HET | ||
| SBS | Chr10 | 1507596 | G-C | HET | ||
| SBS | Chr11 | 12946181 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g22530 |
| SBS | Chr11 | 14480752 | G-A | HET | ||
| SBS | Chr11 | 16878657 | C-A | HET | ||
| SBS | Chr11 | 18176360 | C-T | HET | ||
| SBS | Chr12 | 10722949 | C-T | HET | ||
| SBS | Chr12 | 15289846 | T-C | HET | ||
| SBS | Chr12 | 22928420 | G-A | HET | STOP_GAINED | LOC_Os12g37340 |
| SBS | Chr12 | 9305383 | C-A | HET | ||
| SBS | Chr2 | 10199560 | T-A | HET | ||
| SBS | Chr2 | 11385050 | C-T | HET | ||
| SBS | Chr2 | 35256010 | C-A | Homo | ||
| SBS | Chr2 | 3583831 | C-T | HET | ||
| SBS | Chr3 | 1838424 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g04030 |
| SBS | Chr3 | 24068319 | C-T | Homo | ||
| SBS | Chr3 | 2895789 | G-C | HET | ||
| SBS | Chr3 | 3252250 | G-A | HET | ||
| SBS | Chr3 | 3613641 | A-G | HET | ||
| SBS | Chr3 | 4126018 | A-T | HET | ||
| SBS | Chr4 | 1605980 | G-A | Homo | ||
| SBS | Chr4 | 16261268 | T-C | Homo | ||
| SBS | Chr4 | 16261354 | A-G | Homo | ||
| SBS | Chr4 | 19045630 | C-T | Homo | ||
| SBS | Chr5 | 20369899 | T-A | Homo | ||
| SBS | Chr6 | 10382602 | A-G | HET | ||
| SBS | Chr6 | 20211010 | G-A | Homo | ||
| SBS | Chr8 | 17073697 | C-A | Homo | ||
| SBS | Chr8 | 24138976 | C-T | Homo | ||
| SBS | Chr8 | 9884229 | A-C | Homo | ||
| SBS | Chr9 | 19029862 | A-T | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 7597051 | 7597052 | 1 | LOC_Os03g14000 |
| Deletion | Chr1 | 9649598 | 9649606 | 8 | |
| Deletion | Chr1 | 10129176 | 10129190 | 14 | |
| Deletion | Chr4 | 10367926 | 10367937 | 11 | |
| Deletion | Chr6 | 11340200 | 11340205 | 5 | |
| Deletion | Chr4 | 12746253 | 12746257 | 4 | |
| Deletion | Chr4 | 13707541 | 13707542 | 1 | |
| Deletion | Chr9 | 13882452 | 13882457 | 5 | |
| Deletion | Chr9 | 13996979 | 13996993 | 14 | |
| Deletion | Chr9 | 14564001 | 14575000 | 10999 | LOC_Os09g24480 |
| Deletion | Chr9 | 14926013 | 14926021 | 8 | |
| Deletion | Chr10 | 16879221 | 16879222 | 1 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 6386602 | 6386602 | 1 | LOC_Os10g11530 |
| Insertion | Chr11 | 2897442 | 2897442 | 1 | |
| Insertion | Chr12 | 20190422 | 20190423 | 2 | |
| Insertion | Chr2 | 23487792 | 23487801 | 10 | |
| Insertion | Chr4 | 819348 | 819348 | 1 | |
| Insertion | Chr5 | 22608736 | 22608757 | 22 | |
| Insertion | Chr7 | 21018619 | 21018619 | 1 | |
| Insertion | Chr8 | 26858888 | 26858888 | 1 |
Inversions: 25
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 1306603 | 1306764 | |
| Inversion | Chr12 | 1711834 | 1712060 | |
| Inversion | Chr1 | 2100158 | 2100582 | LOC_Os01g04660 |
| Inversion | Chr2 | 2219427 | 2219590 | |
| Inversion | Chr12 | 4474048 | 4474358 | LOC_Os12g08740 |
| Inversion | Chr1 | 4547376 | 4547511 | |
| Inversion | Chr6 | 4676688 | 4677137 | |
| Inversion | Chr9 | 13702909 | 14564567 | |
| Inversion | Chr9 | 13710955 | 14575524 | LOC_Os09g23160 |
| Inversion | Chr11 | 17268298 | 17268621 | |
| Inversion | Chr9 | 17313049 | 17313371 | |
| Inversion | Chr4 | 18466374 | 18466561 | |
| Inversion | Chr5 | 18489786 | 18490201 | LOC_Os05g31744 |
| Inversion | Chr12 | 19250038 | 19250335 | |
| Inversion | Chr8 | 20604494 | 20604653 | |
| Inversion | Chr7 | 20629459 | 20629878 | |
| Inversion | Chr1 | 21278747 | 21279175 | LOC_Os01g37980 |
| Inversion | Chr12 | 22414791 | 22415048 | LOC_Os12g36600 |
| Inversion | Chr2 | 24270245 | 24270576 | LOC_Os02g40090 |
| Inversion | Chr4 | 26240265 | 26240448 | LOC_Os04g44300 |
| Inversion | Chr7 | 26259237 | 26259387 | LOC_Os07g43940 |
| Inversion | Chr5 | 26966138 | 26966525 | 2 |
| Inversion | Chr5 | 28624086 | 28624340 | LOC_Os05g49890 |
| Inversion | Chr4 | 30606153 | 30606645 | LOC_Os04g51640 |
| Inversion | Chr1 | 41165471 | 41165633 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 18058069 | Chr1 | 185886 |