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Mutant Information

Mutant Name	FN2140-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2140-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14125656	G-A	HET
SBS	Chr1	32290610	C-T	Homo
SBS	Chr1	40261481	C-T	Homo
SBS	Chr11	27826120	T-A	HET
SBS	Chr12	1926211	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g04520
SBS	Chr12	24361341	T-C	HET
SBS	Chr12	26057012	G-C	HET
SBS	Chr12	3161144	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g06530
SBS	Chr12	7646688	G-T	HET
SBS	Chr2	20212545	G-A	HET
SBS	Chr2	2312558	T-C	Homo
SBS	Chr2	23565278	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g39010
SBS	Chr2	25038266	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g41702
SBS	Chr2	6125653	C-T	Homo
SBS	Chr2	7100450	A-C	HET
SBS	Chr2	9464848	T-C	HET
SBS	Chr2	9464849	G-A	HET
SBS	Chr3	14867888	C-T	Homo
SBS	Chr3	17479849	T-G	HET
SBS	Chr3	18786272	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g32840
SBS	Chr3	18808588	G-C	HET
SBS	Chr3	19750285	C-T	HET
SBS	Chr3	19750845	G-A	HET
SBS	Chr3	22027551	T-G	HET
SBS	Chr3	23323707	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g41980
SBS	Chr4	13190127	C-T	HET
SBS	Chr4	14674507	C-T	HET
SBS	Chr4	15397422	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g26400
SBS	Chr4	1849019	G-C	HET
SBS	Chr4	1896971	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04120
SBS	Chr4	1896972	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04120
SBS	Chr4	8524407	G-A	Homo
SBS	Chr5	15542270	T-G	HET
SBS	Chr5	22004796	G-A	HET
SBS	Chr5	22225345	C-A	HET
SBS	Chr5	27667835	A-G	HET
SBS	Chr6	1014775	G-T	Homo
SBS	Chr6	25323014	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42180
SBS	Chr6	29530613	C-T	HET
SBS	Chr6	30385016	G-A	HET
SBS	Chr6	6548286	T-C	HET
SBS	Chr7	1447994	C-T	HET
SBS	Chr7	17645228	C-T	HET
SBS	Chr7	21772372	A-G	HET
SBS	Chr7	22796251	T-G	HET
SBS	Chr7	26786190	G-A	HET
SBS	Chr8	1351271	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03030
SBS	Chr8	26258565	T-C	HET
SBS	Chr8	26258566	A-T	HET
SBS	Chr8	9017476	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14950
SBS	Chr9	2748151	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g05120
SBS	Chr9	4621560	A-G	HET
SBS	Chr9	47341	C-T	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3060030	3060043	13
Deletion	Chr6	4041133	4041137	4	LOC_Os06g08340
Deletion	Chr5	6364226	6364227	1
Deletion	Chr2	7060828	7060847	19
Deletion	Chr7	7687536	7687537	1
Deletion	Chr8	7833139	7833143	4
Deletion	Chr2	8827270	8827276	6
Deletion	Chr1	10424099	10424100	1
Deletion	Chr6	15901055	15901063	8
Deletion	Chr11	16158581	16158588	7
Deletion	Chr10	18937732	18937742	10	LOC_Os10g35436
Deletion	Chr7	22284243	22284245	2	LOC_Os07g37190
Deletion	Chr6	25964901	25964907	6	LOC_Os06g43190
Deletion	Chr4	28333001	28383000	49999	8
Deletion	Chr1	41383221	41383242	21

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36298999	36299012	14
Insertion	Chr6	1193825	1193825	1
Insertion	Chr9	13061771	13061772	2

Inversions: 21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1613429	1613635
Inversion	Chr1	2883522	2883943
Inversion	Chr11	6260080	6260311
Inversion	Chr10	14890261	14890386	LOC_Os10g28590
Inversion	Chr10	16121948	16122186	LOC_Os10g30910
Inversion	Chr2	16813496	16813623
Inversion	Chr6	16887985	16888270
Inversion	Chr7	17253933	17254577	LOC_Os07g29380
Inversion	Chr10	18243275	18243509	LOC_Os10g34180
Inversion	Chr11	19171921	19172353	LOC_Os11g32470
Inversion	Chr8	19446439	19446697	LOC_Os08g31440
Inversion	Chr2	19487139	19487400
Inversion	Chr4	19926583	19926889	LOC_Os04g32960
Inversion	Chr8	20244872	20245406	LOC_Os08g32680
Inversion	Chr3	22086688	22086924
Inversion	Chr1	25383228	25383436	LOC_Os01g44260
Inversion	Chr3	26118900	26119070	LOC_Os03g46190
Inversion	Chr8	27147021	27147167
Inversion	Chr11	28922807	28922947	LOC_Os11g47950
Inversion	Chr4	29042615	29042878
Inversion	Chr1	34480460	34480650	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3667504	Chr2	2071566	2

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