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| Mutant Information |
|---|
| Mutant Name | FN2147-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2147-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25853611 | C-T | HET | ||
| SBS | Chr1 | 36806323 | C-T | HET | ||
| SBS | Chr1 | 40234740 | C-T | HET | ||
| SBS | Chr1 | 8148198 | T-C | HET | ||
| SBS | Chr1 | 8626347 | G-A | HET | ||
| SBS | Chr10 | 8051654 | A-G | HET | ||
| SBS | Chr11 | 19260828 | G-A | HET | ||
| SBS | Chr11 | 23956040 | G-A | HET | ||
| SBS | Chr11 | 24772238 | A-T | HET | ||
| SBS | Chr12 | 17986943 | C-T | HET | ||
| SBS | Chr12 | 19260155 | A-G | HET | ||
| SBS | Chr12 | 7412711 | C-T | HET | ||
| SBS | Chr2 | 24734415 | G-A | HET | ||
| SBS | Chr2 | 33377881 | G-A | HET | ||
| SBS | Chr3 | 26867422 | C-T | HET | ||
| SBS | Chr3 | 28307698 | A-G | HET | ||
| SBS | Chr3 | 28307699 | A-T | HET | ||
| SBS | Chr3 | 33295722 | T-A | HET | ||
| SBS | Chr3 | 3840402 | C-T | HET | ||
| SBS | Chr3 | 4034420 | G-A | HET | ||
| SBS | Chr4 | 18666430 | G-T | HET | ||
| SBS | Chr4 | 33098635 | G-A | HET | ||
| SBS | Chr4 | 33098636 | G-T | HET | ||
| SBS | Chr5 | 20168922 | T-C | HET | ||
| SBS | Chr6 | 1107683 | G-A | Homo | ||
| SBS | Chr6 | 30412553 | C-T | HET | ||
| SBS | Chr7 | 14037660 | C-A | HET | ||
| SBS | Chr7 | 14928424 | C-T | HET | ||
| SBS | Chr7 | 16584438 | G-A | HET | ||
| SBS | Chr7 | 26090474 | A-T | HET | ||
| SBS | Chr8 | 13092482 | G-A | HET | ||
| SBS | Chr8 | 21595431 | A-G | HET | ||
| SBS | Chr8 | 24277191 | T-A | HET | ||
| SBS | Chr9 | 14530536 | C-T | HET | ||
| SBS | Chr9 | 16884242 | C-T | HET | ||
| SBS | Chr9 | 1969464 | G-C | HET | ||
| SBS | Chr9 | 21992578 | C-T | HET | ||
| SBS | Chr9 | 9126219 | G-A | HET |
Deletions: 7
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 16714835 | 16714835 | 1 | |
| Insertion | Chr8 | 3980798 | 3980822 | 25 | |
| Insertion | Chr9 | 1383674 | 1383674 | 1 | LOC_Os09g02950 |
Inversions: 20
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 3784519 | 3784886 | LOC_Os06g07790 |
| Inversion | Chr11 | 4253294 | 4253656 | LOC_Os11g08110 |
| Inversion | Chr4 | 5464542 | 5464708 | LOC_Os04g10120 |
| Inversion | Chr8 | 8565786 | 9098793 | 2 |
| Inversion | Chr12 | 9369483 | 9369712 | |
| Inversion | Chr10 | 11102685 | 11103031 | |
| Inversion | Chr9 | 11952085 | 11952430 | LOC_Os09g19960 |
| Inversion | Chr8 | 15209708 | 15209817 | LOC_Os08g25060 |
| Inversion | Chr8 | 19226770 | 19720324 | LOC_Os08g31130 |
| Inversion | Chr5 | 19522710 | 19523059 | |
| Inversion | Chr8 | 20619764 | 20619864 | LOC_Os08g33154 |
| Inversion | Chr11 | 20691285 | 20691418 | |
| Inversion | Chr6 | 21712989 | 22325705 | LOC_Os06g36850 |
| Inversion | Chr6 | 21712990 | 22325713 | LOC_Os06g36850 |
| Inversion | Chr7 | 23232885 | 23575009 | |
| Inversion | Chr7 | 23232900 | 23575008 | |
| Inversion | Chr2 | 26778623 | 27436810 | 2 |
| Inversion | Chr2 | 27436811 | 27498506 | LOC_Os02g45200 |
| Inversion | Chr7 | 28949209 | 28949726 | |
| Inversion | Chr3 | 32438105 | 32438363 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3642510 | Chr2 | 32366191 | |
| Translocation | Chr2 | 4657050 | Chr1 | 1043539 | |
| Translocation | Chr12 | 7648672 | Chr11 | 5772393 | |
| Translocation | Chr9 | 13368708 | Chr3 | 19922630 | |
| Translocation | Chr10 | 18195559 | Chr9 | 3015565 | |
| Translocation | Chr8 | 18982581 | Chr1 | 28204728 | |
| Translocation | Chr7 | 21657421 | Chr4 | 31867808 | |
| Translocation | Chr3 | 23685527 | Chr2 | 33261792 | 2 |