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Mutant Information

Mutant Name	FN2162-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2162-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15666093	G-T	HET
SBS	Chr2	19606234	C-T	HET
SBS	Chr2	27467431	G-A	Homo
SBS	Chr2	2816030	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g05720
SBS	Chr3	33858726	T-C	HET
SBS	Chr4	14910914	G-A	HET
SBS	Chr4	30316830	C-G	HET
SBS	Chr5	25086221	T-C	HET
SBS	Chr6	11103263	G-T	HET
SBS	Chr6	20245428	T-C	Homo
SBS	Chr6	9383863	G-C	Homo
SBS	Chr7	18156006	A-C	HET
SBS	Chr9	4625022	G-A	HET
SBS	Chr9	7032604	G-A	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	5149017	5149019	2
Deletion	Chr4	11698809	11698810	1
Deletion	Chr12	12929001	12956000	26999	4
Deletion	Chr4	13431903	13431911	8
Deletion	Chr12	15917231	15917233	2	LOC_Os12g27120
Deletion	Chr4	16737001	16757000	19999	2
Deletion	Chr4	16778001	16951000	172999	24
Deletion	Chr4	17317001	17455000	137999	14
Deletion	Chr3	17320871	17320875	4	LOC_Os03g30370
Deletion	Chr2	17778938	17778939	1
Deletion	Chr5	21579930	21579931	1
Deletion	Chr7	21664472	21664477	5
Deletion	Chr8	27243001	27268000	24999	2
Deletion	Chr3	28225038	28225049	11	LOC_Os03g49560
Deletion	Chr3	31536697	31536698	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20843542	20843543	2
Insertion	Chr10	11340319	11340319	1	LOC_Os10g21962
Insertion	Chr12	2202219	2202222	4
Insertion	Chr2	8352838	8352839	2
Insertion	Chr4	4825104	4825104	1
Insertion	Chr9	17212151	17212151	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	549353	549632	LOC_Os04g01874
Inversion	Chr8	860513	860762
Inversion	Chr6	1772769	1773160
Inversion	Chr2	20382929	20383179
Inversion	Chr2	21184327	21184696	LOC_Os02g35240
Inversion	Chr1	41598795	41598974

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4008630	Chr4	16749684
Translocation	Chr6	4132713	Chr1	6087813
Translocation	Chr8	6838546	Chr3	18173068
Translocation	Chr11	14282070	Chr3	23252568