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| Mutant Information |
|---|
| Mutant Name | FN2164-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2164-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1034668 | T-C | HET | ||
| SBS | Chr1 | 40457029 | C-T | HET | ||
| SBS | Chr10 | 16630509 | A-T | HET | ||
| SBS | Chr10 | 23173126 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g42999 |
| SBS | Chr10 | 4392212 | A-C | HET | ||
| SBS | Chr10 | 4994746 | C-T | Homo | ||
| SBS | Chr11 | 1207305 | C-A | HET | ||
| SBS | Chr11 | 1207307 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g03270 |
| SBS | Chr11 | 14908508 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g26070 |
| SBS | Chr11 | 14908510 | T-C | Homo | ||
| SBS | Chr11 | 23816458 | G-A | Homo | ||
| SBS | Chr12 | 10806223 | G-A | Homo | ||
| SBS | Chr2 | 18882702 | G-A | Homo | ||
| SBS | Chr2 | 29712048 | A-C | Homo | ||
| SBS | Chr2 | 32293083 | G-A | Homo | ||
| SBS | Chr2 | 34025238 | G-A | HET | ||
| SBS | Chr3 | 10311574 | T-G | HET | ||
| SBS | Chr3 | 10591478 | G-T | Homo | ||
| SBS | Chr3 | 26901054 | G-A | HET | ||
| SBS | Chr3 | 3094739 | G-T | HET | ||
| SBS | Chr4 | 10267495 | G-A | Homo | ||
| SBS | Chr4 | 10286253 | G-T | HET | ||
| SBS | Chr4 | 15490849 | A-T | Homo | ||
| SBS | Chr4 | 2675751 | G-T | HET | ||
| SBS | Chr4 | 28748667 | T-G | HET | ||
| SBS | Chr4 | 691240 | G-T | Homo | ||
| SBS | Chr5 | 13180241 | G-T | HET | ||
| SBS | Chr5 | 29808201 | G-A | HET | ||
| SBS | Chr6 | 12239577 | T-A | Homo | ||
| SBS | Chr6 | 12239578 | C-A | Homo | ||
| SBS | Chr6 | 26108834 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g43440 |
| SBS | Chr6 | 27919289 | A-C | HET | ||
| SBS | Chr7 | 26215383 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g43820 |
| SBS | Chr7 | 28495527 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g47700 |
| SBS | Chr8 | 12106632 | C-T | HET | ||
| SBS | Chr8 | 24899997 | G-C | Homo | ||
| SBS | Chr8 | 5113798 | T-C | Homo | ||
| SBS | Chr9 | 13644253 | C-T | HET | ||
| SBS | Chr9 | 3017678 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g06400 |
| SBS | Chr9 | 4747207 | C-G | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 1684068 | 1684077 | 9 | LOC_Os08g03600 |
| Deletion | Chr9 | 5349307 | 5349310 | 3 | |
| Deletion | Chr6 | 5448496 | 5448513 | 17 | |
| Deletion | Chr9 | 7804136 | 7804137 | 1 | |
| Deletion | Chr11 | 15243633 | 15243637 | 4 | |
| Deletion | Chr6 | 15430331 | 15430332 | 1 | |
| Deletion | Chr4 | 16600614 | 16600615 | 1 | |
| Deletion | Chr2 | 18910663 | 18910751 | 88 | |
| Deletion | Chr1 | 20048503 | 20048510 | 7 | |
| Deletion | Chr6 | 21265308 | 21265438 | 130 | LOC_Os06g36290 |
| Deletion | Chr5 | 22827001 | 22921000 | 93999 | 16 |
| Deletion | Chr12 | 23168366 | 23168375 | 9 | LOC_Os12g37740 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 17306095 | 17306097 | 3 | |
| Insertion | Chr12 | 11575371 | 11575371 | 1 | |
| Insertion | Chr3 | 22607473 | 22607484 | 12 | |
| Insertion | Chr7 | 9266918 | 9266977 | 60 |
Inversions: 11
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 3644735 | 3644883 | |
| Inversion | Chr3 | 12202670 | 12226029 | 2 |
| Inversion | Chr1 | 17299138 | 18096009 | |
| Inversion | Chr1 | 17299179 | 18096023 | |
| Inversion | Chr8 | 20605646 | 20606009 | |
| Inversion | Chr1 | 22303569 | 22303814 | LOC_Os01g39560 |
| Inversion | Chr7 | 23008593 | 23008742 | |
| Inversion | Chr5 | 23715987 | 23716333 | |
| Inversion | Chr6 | 24621426 | 24621637 | |
| Inversion | Chr1 | 31643981 | 31646344 | LOC_Os01g55040 |
| Inversion | Chr1 | 31643986 | 31646343 | LOC_Os01g55040 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 1063327 | Chr7 | 3622609 | 2 |
| Translocation | Chr8 | 1064124 | Chr7 | 3622603 | 2 |
| Translocation | Chr11 | 2139321 | Chr6 | 20692847 | LOC_Os11g04980 |
| Translocation | Chr11 | 2139322 | Chr6 | 20688428 | LOC_Os11g04980 |
| Translocation | Chr8 | 9996745 | Chr5 | 4493745 | |
| Translocation | Chr8 | 10058218 | Chr6 | 11312828 | 2 |
| Translocation | Chr11 | 16590731 | Chr6 | 27543274 | 2 |