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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16517649	A-C	Homo
SBS	Chr1	19705943	C-T	Homo
SBS	Chr1	24741250	G-A	Homo
SBS	Chr1	33779982	G-T	Homo
SBS	Chr1	3793982	C-T	HET
SBS	Chr1	4850433	C-T	HET
SBS	Chr10	11119567	G-A	Homo
SBS	Chr10	11119568	G-A	Homo
SBS	Chr10	12235998	T-A	Homo
SBS	Chr10	14621106	G-A	HET
SBS	Chr10	18758407	G-A	HET
SBS	Chr10	20621627	T-A	HET
SBS	Chr10	20951784	G-A	HET
SBS	Chr11	2158367	C-A	HET
SBS	Chr11	5558222	T-A	Homo
SBS	Chr11	5558223	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g10240
SBS	Chr12	21678945	G-A	Homo
SBS	Chr12	3649274	T-C	HET
SBS	Chr2	27088884	G-A	Homo
SBS	Chr2	29170693	C-T	Homo
SBS	Chr2	4730242	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g09210
SBS	Chr3	31480861	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g55340
SBS	Chr3	33721744	C-A	HET
SBS	Chr4	12035290	G-A	Homo
SBS	Chr4	19298714	C-G	Homo
SBS	Chr4	25572883	G-T	Homo
SBS	Chr4	28377544	A-G	Homo
SBS	Chr4	625665	C-T	HET
SBS	Chr4	8612503	G-A	Homo
SBS	Chr5	11623533	G-A	HET
SBS	Chr6	10867379	C-A	HET
SBS	Chr6	13007430	A-T	HET
SBS	Chr6	26238325	A-G	HET
SBS	Chr6	8730282	A-T	HET
SBS	Chr6	9165732	G-T	HET
SBS	Chr7	22747152	G-A	HET
SBS	Chr7	23270277	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38780
SBS	Chr8	8526450	T-A	Homo
SBS	Chr9	5418445	C-A	HET

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3441967	3441980	13
Deletion	Chr1	3873383	3873387	4	LOC_Os01g08000
Deletion	Chr6	4357258	4357259	1
Deletion	Chr6	4457011	4457012	1
Deletion	Chr6	5351964	5351971	7
Deletion	Chr8	5909766	5909774	8	LOC_Os08g10190
Deletion	Chr8	6952512	6952513	1	LOC_Os08g11850
Deletion	Chr8	7479585	7479602	17	LOC_Os08g12650
Deletion	Chr4	9553110	9553112	2
Deletion	Chr2	11329001	11412000	82999	14
Deletion	Chr7	12229546	12229547	1
Deletion	Chr2	13078818	13078824	6
Deletion	Chr3	14192321	14192323	2
Deletion	Chr12	15540968	15540969	1
Deletion	Chr2	15764233	15764238	5
Deletion	Chr5	16864321	16864323	2
Deletion	Chr3	17308988	17308989	1
Deletion	Chr11	17402989	17402990	1
Deletion	Chr10	18925465	18925489	24	LOC_Os10g35400
Deletion	Chr8	22345607	22345608	1
Deletion	Chr4	28845325	28845334	9
Deletion	Chr5	29877363	29877364	1
Deletion	Chr1	36175064	36175066	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	8095476	8095477	2
Insertion	Chr11	12194598	12194598	1
Insertion	Chr12	15721069	15721070	2
Insertion	Chr5	4699069	4699070	2
Insertion	Chr6	26111618	26111618	1	LOC_Os06g43450
Insertion	Chr9	13581561	13581571	11

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3117283	3377045	LOC_Os08g05810
Inversion	Chr8	3117501	3377056
Inversion	Chr9	6321229	6321513
Inversion	Chr7	6992086	7188760
Inversion	Chr7	6992093	7188761
Inversion	Chr3	25260840	25261256
Inversion	Chr3	25260985	25261256
Inversion	Chr3	26031989	26032116
Inversion	Chr4	30939882	30940281	LOC_Os04g52090

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	7040253	Chr1	23344171	2
Translocation	Chr8	7315805	Chr4	11908475	2
Translocation	Chr11	8617750	Chr3	21846120
Translocation	Chr10	10312438	Chr4	5525821
Translocation	Chr6	13392281	Chr2	23802466	2
Translocation	Chr6	13393326	Chr2	23802471	2
Translocation	Chr9	15112975	Chr1	5474338
Translocation	Chr4	16416779	Chr1	32335248	2
Translocation	Chr11	16868533	Chr5	23198628	2
Translocation	Chr11	16870135	Chr5	23198626	2
Translocation	Chr9	17902754	Chr1	32265487
Translocation	Chr11	26222206	Chr9	12031553	2

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