Search Results
| Mutant Information |
|---|
| Mutant Name | FN2167-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2167-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3393632 | G-A | HET | ||
| SBS | Chr1 | 31555742 | A-T | HET | ||
| SBS | Chr1 | 40182259 | T-A | Homo | ||
| SBS | Chr2 | 11432423 | T-A | HET | ||
| SBS | Chr2 | 25159627 | A-T | Homo | ||
| SBS | Chr2 | 30688042 | T-C | HET | ||
| SBS | Chr3 | 5184437 | G-A | Homo | ||
| SBS | Chr3 | 20887359 | A-G | HET | ||
| SBS | Chr3 | 28073539 | C-A | HET | ||
| SBS | Chr3 | 32653015 | T-C | HET | ||
| SBS | Chr3 | 34520421 | C-T | HET | ||
| SBS | Chr5 | 21351139 | G-A | HET | ||
| SBS | Chr6 | 30436203 | G-A | Homo | ||
| SBS | Chr7 | 15890172 | C-A | HET | ||
| SBS | Chr7 | 17882621 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g30250 |
| SBS | Chr7 | 20783800 | G-A | Homo | ||
| SBS | Chr8 | 9186705 | G-A | HET | ||
| SBS | Chr8 | 15483555 | A-C | HET | ||
| SBS | Chr8 | 19880368 | G-A | HET | ||
| SBS | Chr9 | 16172299 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g26650 |
| SBS | Chr11 | 11574294 | A-T | HET | ||
| SBS | Chr11 | 16379835 | T-G | Homo | ||
| SBS | Chr12 | 3246684 | G-A | HET | ||
| SBS | Chr12 | 26346025 | G-A | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 480762 | 480763 | 1 | |
| Deletion | Chr4 | 10975557 | 10975558 | 1 | LOC_Os04g19670 |
| Deletion | Chr6 | 10986253 | 10986255 | 2 | |
| Deletion | Chr11 | 12630882 | 12630886 | 4 | |
| Deletion | Chr11 | 13532001 | 13791000 | 258999 | 31 |
| Deletion | Chr2 | 14331206 | 14331222 | 16 | |
| Deletion | Chr11 | 16712633 | 16712634 | 1 | |
| Deletion | Chr1 | 33792598 | 33792599 | 1 | LOC_Os01g58459 |
| Deletion | Chr1 | 40324304 | 40324308 | 4 |
Insertions: 5
Inversions: 10
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 6391647 | 6396072 | |
| Inversion | Chr4 | 6391662 | 6396077 | |
| Inversion | Chr12 | 20147140 | 20147581 | |
| Inversion | Chr12 | 25746128 | 25746441 | |
| Inversion | Chr11 | 27730570 | 27730726 | |
| Inversion | Chr3 | 28142343 | 28142549 | |
| Inversion | Chr3 | 29796983 | 29797278 | LOC_Os03g51950 |
| Inversion | Chr3 | 30240714 | 30240978 | LOC_Os03g52750 |
| Inversion | Chr2 | 32932530 | 32932693 | |
| Inversion | Chr1 | 34086540 | 34086722 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 4057523 | Chr7 | 9310014 | |
| Translocation | Chr12 | 4278313 | Chr4 | 3934601 | |
| Translocation | Chr7 | 5943521 | Chr3 | 31605257 | 2 |
| Translocation | Chr12 | 6128920 | Chr6 | 22815965 | |
| Translocation | Chr8 | 8339680 | Chr2 | 27969078 | |
| Translocation | Chr6 | 8967814 | Chr5 | 12652266 | |
| Translocation | Chr6 | 11436900 | Chr4 | 742336 | |
| Translocation | Chr11 | 13698573 | Chr8 | 10037164 | 2 |
| Translocation | Chr4 | 16579066 | Chr1 | 36181052 | LOC_Os04g28074 |
| Translocation | Chr11 | 28239309 | Chr8 | 23228936 | 2 |
| Translocation | Chr3 | 35300757 | Chr2 | 16481502 | 2 |