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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15793169	T-G	Homo
SBS	Chr1	33960681	G-C	HET
SBS	Chr1	34919998	G-C	HET
SBS	Chr2	6579241	T-C	Homo
SBS	Chr2	10291027	G-A	Homo
SBS	Chr2	20298071	G-A	HET
SBS	Chr3	4714640	G-A	HET
SBS	Chr3	14999254	A-C	HET
SBS	Chr3	23601416	A-C	HET
SBS	Chr3	27676040	T-C	Homo
SBS	Chr3	27799181	G-T	HET
SBS	Chr3	28501288	G-A	HET
SBS	Chr3	29504926	C-T	Homo
SBS	Chr3	32893619	G-C	Homo
SBS	Chr4	2279324	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g04740
SBS	Chr4	35013360	A-G	HET
SBS	Chr5	464747	T-A	HET
SBS	Chr5	18142026	A-C	HET
SBS	Chr6	2258784	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g05110
SBS	Chr6	9976871	C-T	HET
SBS	Chr6	16224169	G-C	HET
SBS	Chr7	6838516	G-A	Homo
SBS	Chr7	10609978	G-A	HET
SBS	Chr8	3396538	G-A	HET
SBS	Chr8	3403977	G-T	HET
SBS	Chr8	3403978	G-T	HET
SBS	Chr8	15599940	A-C	HET
SBS	Chr8	19871284	G-A	HET
SBS	Chr9	4107808	C-G	HET
SBS	Chr10	9179158	T-C	Homo
SBS	Chr10	9777759	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g19190
SBS	Chr11	16105927	C-A	Homo
SBS	Chr12	10008397	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g17470
SBS	Chr12	10386545	A-G	Homo
SBS	Chr12	15781119	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g26950
SBS	Chr12	22105452	G-A	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	375455	375457	2
Deletion	Chr3	1048453	1048464	11
Deletion	Chr3	1118016	1118018	2
Deletion	Chr10	2291421	2291430	9
Deletion	Chr1	2507302	2507304	2	LOC_Os01g05320
Deletion	Chr4	3929642	3929672	30
Deletion	Chr7	5719329	5719330	1
Deletion	Chr12	8483787	8483804	17
Deletion	Chr10	10036692	10036700	8
Deletion	Chr10	13404884	13404894	10
Deletion	Chr11	15611001	15660000	48999	6
Deletion	Chr12	15781023	15781034	11	LOC_Os12g26950
Deletion	Chr7	18816077	18816089	12
Deletion	Chr10	18971626	18971640	14	LOC_Os10g35450
Deletion	Chr10	21521749	21521752	3
Deletion	Chr2	26883985	26883988	3
Deletion	Chr2	31105369	31105377	8
Deletion	Chr2	33712788	33712792	4

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	26651070	26651071	2
Insertion	Chr7	19025978	19025979	2
Insertion	Chr1	2257186	2257186	1
Insertion	Chr3	3059118	3059118	1
Insertion	Chr11	17536668	17536668	1
Insertion	Chr11	27724750	27724815	66
Insertion	Chr12	1823813	1823820	8

Inversions: 27

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	454397	454687
Inversion	Chr5	1743802	1744070	LOC_Os05g03900
Inversion	Chr2	4012564	4012673
Inversion	Chr7	4591069	4591221
Inversion	Chr3	6274988	6275093	LOC_Os03g11960
Inversion	Chr6	6535216	6535469	LOC_Os06g12190
Inversion	Chr5	6655121	6655266	LOC_Os05g11720
Inversion	Chr11	7646709	7646878	LOC_Os11g13860
Inversion	Chr8	10269650	10269866	LOC_Os08g16790
Inversion	Chr6	11637029	11637145
Inversion	Chr3	11935507	11935734
Inversion	Chr8	12797753	12797876
Inversion	Chr2	15597341	15597540	LOC_Os02g26560
Inversion	Chr10	17307864	17307994
Inversion	Chr10	19230848	19230958	LOC_Os10g35980
Inversion	Chr10	19609103	19609590	LOC_Os10g36650
Inversion	Chr2	23051683	23051928
Inversion	Chr1	23803379	23803609
Inversion	Chr3	24727749	24728014	LOC_Os03g44010
Inversion	Chr7	25754441	25754718	LOC_Os07g42994
Inversion	Chr4	26669902	26670102	LOC_Os04g45080
Inversion	Chr4	28197927	28198237	LOC_Os04g47550
Inversion	Chr3	28904077	28904392	LOC_Os03g50620
Inversion	Chr6	31217128	31217404	LOC_Os06g51520
Inversion	Chr1	34019698	34019865
Inversion	Chr1	41910534	42248384	2
Inversion	Chr1	41912726	42248398	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4136909	Chr7	3304292
Translocation	Chr12	12183085	Chr6	22177390
Translocation	Chr12	12621111	Chr6	14875241	LOC_Os12g22360
Translocation	Chr12	15184108	Chr3	34394598	2
Translocation	Chr11	16008254	Chr1	18532105	2
Translocation	Chr10	16394933	Chr4	27332032
Translocation	Chr11	17770759	Chr5	19949319
Translocation	Chr6	18097828	Chr1	42248398	2
Translocation	Chr6	18098145	Chr1	41912726
Translocation	Chr4	33112095	Chr2	8783551	LOC_Os04g55620

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