Search Results
| Mutant Information |
|---|
| Mutant Name | FN2178-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2178-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16565833 | G-A | HET | ||
| SBS | Chr1 | 28215564 | T-A | HET | ||
| SBS | Chr2 | 20913522 | C-T | HET | ||
| SBS | Chr3 | 7812897 | G-A | HET | ||
| SBS | Chr3 | 25044447 | G-A | HET | ||
| SBS | Chr3 | 27731676 | A-T | Homo | ||
| SBS | Chr4 | 10686214 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g19240 |
| SBS | Chr4 | 13684900 | C-A | HET | ||
| SBS | Chr4 | 18509014 | A-G | HET | ||
| SBS | Chr4 | 18761428 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g31360 |
| SBS | Chr4 | 32580731 | T-C | HET | ||
| SBS | Chr5 | 1573103 | G-A | HET | ||
| SBS | Chr5 | 13905000 | G-A | HET | ||
| SBS | Chr5 | 25975929 | A-T | HET | ||
| SBS | Chr6 | 8080208 | G-T | HET | ||
| SBS | Chr6 | 11774160 | A-G | HET | ||
| SBS | Chr6 | 24030586 | G-T | HET | ||
| SBS | Chr7 | 9985943 | G-A | HET | ||
| SBS | Chr7 | 24375185 | C-A | Homo | ||
| SBS | Chr7 | 29427190 | G-C | HET | ||
| SBS | Chr8 | 3228899 | T-A | HET | ||
| SBS | Chr8 | 7581685 | T-G | Homo | ||
| SBS | Chr8 | 7970849 | G-C | Homo | ||
| SBS | Chr8 | 10948993 | A-T | Homo | ||
| SBS | Chr9 | 19175747 | T-A | HET | ||
| SBS | Chr9 | 19560917 | G-A | HET | ||
| SBS | Chr9 | 20288843 | T-G | HET | ||
| SBS | Chr9 | 20564720 | A-T | Homo | ||
| SBS | Chr11 | 11030967 | A-G | Homo | ||
| SBS | Chr11 | 13183940 | G-T | Homo | STOP_GAINED | LOC_Os11g22930 |
| SBS | Chr12 | 319614 | C-T | Homo | ||
| SBS | Chr12 | 12697712 | C-G | HET | ||
| SBS | Chr12 | 16899302 | A-G | HET | ||
| SBS | Chr12 | 22154540 | G-T | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1832665 | 1832672 | 7 | |
| Deletion | Chr6 | 8188586 | 8188588 | 2 | |
| Deletion | Chr1 | 8218589 | 8218590 | 1 | |
| Deletion | Chr11 | 8247409 | 8247411 | 2 | LOC_Os11g14630 |
| Deletion | Chr3 | 8448022 | 8448035 | 13 | |
| Deletion | Chr11 | 16671608 | 16671609 | 1 | |
| Deletion | Chr4 | 17376001 | 17601000 | 224999 | 23 |
| Deletion | Chr10 | 18732332 | 18732333 | 1 | |
| Deletion | Chr8 | 19045724 | 19045727 | 3 | LOC_Os08g30850 |
| Deletion | Chr5 | 26009564 | 26009565 | 1 |
Insertions: 5
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 73151 | 73409 | 2 |
| Inversion | Chr5 | 3484953 | 3485320 | LOC_Os05g06690 |
| Inversion | Chr2 | 8954436 | 8954730 | |
| Inversion | Chr7 | 21653075 | 21653424 | 2 |
| Inversion | Chr5 | 27637397 | 27637566 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 238852 | Chr1 | 15178322 | LOC_Os11g01380 |
| Translocation | Chr8 | 5022446 | Chr6 | 9640254 | 2 |
| Translocation | Chr8 | 6527147 | Chr4 | 1143520 | |
| Translocation | Chr7 | 13502512 | Chr1 | 18684006 | |
| Translocation | Chr11 | 13737822 | Chr10 | 8063135 | 2 |
| Translocation | Chr10 | 16597167 | Chr5 | 28643813 | |
| Translocation | Chr10 | 16604802 | Chr1 | 15178305 |