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Mutant Information |
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Mutant Name | FN2214-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2214-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 28
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr10 | 1050578 | G-A | HET | ||
SBS | Chr10 | 11601017 | G-A | Homo | ||
SBS | Chr10 | 11601018 | G-A | Homo | ||
SBS | Chr10 | 11601019 | C-A | Homo | ||
SBS | Chr10 | 1274602 | C-T | HET | ||
SBS | Chr10 | 17571769 | C-T | HET | ||
SBS | Chr10 | 19423274 | A-T | HET | ||
SBS | Chr10 | 21670130 | C-T | HET | ||
SBS | Chr11 | 21088561 | T-G | Homo | ||
SBS | Chr11 | 508811 | C-T | HET | ||
SBS | Chr12 | 18281669 | T-A | HET | ||
SBS | Chr12 | 22272343 | T-G | Homo | STOP_GAINED | LOC_Os12g36380 |
SBS | Chr12 | 23690591 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g38570 |
SBS | Chr2 | 14466607 | A-C | HET | ||
SBS | Chr2 | 26917155 | C-T | Homo | ||
SBS | Chr2 | 9432034 | G-A | Homo | ||
SBS | Chr3 | 19508198 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g34270 |
SBS | Chr3 | 31033018 | G-A | HET | ||
SBS | Chr3 | 37628 | C-T | HET | ||
SBS | Chr4 | 32260180 | G-T | HET | STOP_GAINED | LOC_Os04g54150 |
SBS | Chr4 | 5755066 | A-T | HET | ||
SBS | Chr5 | 26153090 | T-C | HET | ||
SBS | Chr7 | 15110741 | G-T | HET | ||
SBS | Chr8 | 14974549 | G-A | HET | ||
SBS | Chr8 | 19355617 | G-T | HET | ||
SBS | Chr8 | 4598685 | C-A | HET | ||
SBS | Chr8 | 787107 | T-C | HET | ||
SBS | Chr9 | 22483270 | T-G | HET |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 3179464 | 3179482 | 18 | LOC_Os03g06350 |
Deletion | Chr1 | 3837083 | 3837084 | 1 | LOC_Os01g07940 |
Deletion | Chr8 | 3872211 | 3872212 | 1 | |
Deletion | Chr10 | 4311001 | 4565000 | 253999 | 41 |
Deletion | Chr10 | 4570001 | 4615000 | 44999 | 10 |
Deletion | Chr10 | 4617001 | 4647000 | 29999 | 4 |
Deletion | Chr2 | 5569268 | 5569289 | 21 | LOC_Os02g10590 |
Deletion | Chr3 | 6761449 | 6761450 | 1 | |
Deletion | Chr2 | 9030807 | 9030821 | 14 | |
Deletion | Chr6 | 9196001 | 9256000 | 59999 | 11 |
Deletion | Chr11 | 12932001 | 13254000 | 321999 | 52 |
Deletion | Chr9 | 13177873 | 13177876 | 3 | LOC_Os09g21760 |
Deletion | Chr11 | 13257001 | 13322000 | 64999 | 9 |
Deletion | Chr9 | 13277001 | 13377000 | 99999 | 18 |
Deletion | Chr3 | 17841340 | 17841341 | 1 | |
Deletion | Chr3 | 21399925 | 21399931 | 6 | LOC_Os03g38560 |
Deletion | Chr10 | 22192967 | 22192975 | 8 | |
Deletion | Chr8 | 23279001 | 23318000 | 38999 | 6 |
Deletion | Chr4 | 29507861 | 29507880 | 19 | LOC_Os04g49460 |
Deletion | Chr2 | 33704354 | 33704360 | 6 | |
Deletion | Chr1 | 41277299 | 41277300 | 1 |
Insertions: 6
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 20878309 | 20878330 | 22 | |
Insertion | Chr12 | 4543496 | 4543497 | 2 | |
Insertion | Chr3 | 13027045 | 13027046 | 2 | |
Insertion | Chr3 | 20637175 | 20637176 | 2 | |
Insertion | Chr3 | 33373185 | 33373186 | 2 | LOC_Os03g58600![]() |
Insertion | Chr7 | 11923030 | 11923030 | 1 |
Inversions: 5
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 10924574 | Chr9 | 7407204 | |
Translocation | Chr9 | 13382670 | Chr6 | 22051845 | 2 |
Translocation | Chr11 | 17222547 | Chr5 | 21480984 | 2 |
Translocation | Chr11 | 17223022 | Chr5 | 21480791 | 2 |
Translocation | Chr5 | 25944107 | Chr4 | 30551815 | 2 |
Translocation | Chr5 | 25944110 | Chr4 | 31639039 | 2 |