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Mutant Information

Mutant NameFN2214-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2214-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 28
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr101050578G-AHET
SBSChr1011601017G-AHomo
SBSChr1011601018G-AHomo
SBSChr1011601019C-AHomo
SBSChr101274602C-THET
SBSChr1017571769C-THET
SBSChr1019423274A-THET
SBSChr1021670130C-THET
SBSChr1121088561T-GHomo
SBSChr11508811C-THET
SBSChr1218281669T-AHET
SBSChr1222272343T-GHomoSTOP_GAINEDLOC_Os12g36380
SBSChr1223690591G-THETNON_SYNONYMOUS_CODINGLOC_Os12g38570
SBSChr214466607A-CHET
SBSChr226917155C-THomo
SBSChr29432034G-AHomo
SBSChr319508198G-AHETNON_SYNONYMOUS_CODINGLOC_Os03g34270
SBSChr331033018G-AHET
SBSChr337628C-THET
SBSChr432260180G-THETSTOP_GAINEDLOC_Os04g54150
SBSChr45755066A-THET
SBSChr526153090T-CHET
SBSChr715110741G-THET
SBSChr814974549G-AHET
SBSChr819355617G-THET
SBSChr84598685C-AHET
SBSChr8787107T-CHET
SBSChr922483270T-GHET

Deletions: 21
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr33179464317948218LOC_Os03g06350
DeletionChr1383708338370841LOC_Os01g07940
DeletionChr8387221138722121
DeletionChr104311001456500025399941
DeletionChr10457000146150004499910
DeletionChr1046170014647000299994
DeletionChr25569268556928921LOC_Os02g10590
DeletionChr3676144967614501
DeletionChr29030807903082114
DeletionChr6919600192560005999911
DeletionChr11129320011325400032199952
DeletionChr913177873131778763LOC_Os09g21760
DeletionChr111325700113322000649999
DeletionChr913277001133770009999918
DeletionChr317841340178413411
DeletionChr321399925213999316LOC_Os03g38560
DeletionChr1022192967221929758
DeletionChr82327900123318000389996
DeletionChr4295078612950788019LOC_Os04g49460
DeletionChr233704354337043606
DeletionChr141277299412773001

Insertions: 6
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr11208783092087833022
InsertionChr12454349645434972
InsertionChr313027045130270462
InsertionChr320637175206371762
InsertionChr333373185333731862LOC_Os03g58600image
InsertionChr711923030119230301

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr567275826818262
InversionChr567275956818404
InversionChr101011526210595806
InversionChr101076868710781348
InversionChr430672846316399512

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1110924574Chr97407204
TranslocationChr913382670Chr6220518452
TranslocationChr1117222547Chr5214809842
TranslocationChr1117223022Chr5214807912
TranslocationChr525944107Chr4305518152
TranslocationChr525944110Chr4316390392