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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12883054	G-A	HET
SBS	Chr1	13253215	G-A	Homo
SBS	Chr1	16452082	A-T	HET
SBS	Chr1	18650545	C-T	Homo
SBS	Chr1	24216845	A-G	HET
SBS	Chr1	24216848	C-T	HET
SBS	Chr1	37228810	G-A	HET	STOP_GAINED	LOC_Os01g64080
SBS	Chr1	40936269	A-G	HET
SBS	Chr1	42057538	G-A	Homo
SBS	Chr10	8972828	G-A	HET
SBS	Chr11	1478118	C-G	HET
SBS	Chr11	23974393	A-G	Homo
SBS	Chr12	11490831	A-G	HET
SBS	Chr12	8835327	C-A	HET
SBS	Chr2	13812896	C-T	HET
SBS	Chr2	14963154	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g25590
SBS	Chr2	9785484	C-T	HET
SBS	Chr3	11889277	A-G	HET
SBS	Chr3	26662352	C-T	Homo
SBS	Chr3	27982763	C-T	HET
SBS	Chr3	31281332	T-G	HET
SBS	Chr3	353757	G-T	HET
SBS	Chr4	11955408	G-A	HET
SBS	Chr4	16698697	T-A	HET
SBS	Chr4	19463314	G-A	HET
SBS	Chr4	26126415	C-T	Homo
SBS	Chr4	2791895	T-C	HET
SBS	Chr7	17142324	C-T	HET
SBS	Chr7	20182302	C-T	Homo
SBS	Chr8	16662159	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27290
SBS	Chr8	20997323	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33620
SBS	Chr8	3310558	C-T	Homo
SBS	Chr8	7854352	G-T	HET
SBS	Chr9	12574453	G-A	Homo
SBS	Chr9	2056687	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g04010
SBS	Chr9	3314631	C-G	Homo

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	759349	759353	4
Deletion	Chr4	1824773	1824777	4
Deletion	Chr11	4169386	4169389	3	LOC_Os11g08020
Deletion	Chr7	4797184	4797194	10
Deletion	Chr3	6028001	6038000	9999
Deletion	Chr2	6817989	6818005	16	LOC_Os02g12910
Deletion	Chr1	6940758	6940772	14	LOC_Os01g12610
Deletion	Chr6	8448703	8448715	12
Deletion	Chr8	9654083	9654084	1
Deletion	Chr12	10708558	10708563	5
Deletion	Chr1	11532679	11532692	13
Deletion	Chr3	13482318	13482323	5
Deletion	Chr3	17423736	17423740	4	LOC_Os03g30530
Deletion	Chr1	18308530	18308545	15
Deletion	Chr4	19331522	19331526	4
Deletion	Chr2	19461601	19461609	8
Deletion	Chr7	20913556	20913558	2	LOC_Os07g34890
Deletion	Chr5	23568725	23568729	4	LOC_Os05g40110
Deletion	Chr1	25367349	25367350	1
Deletion	Chr1	27300741	27300746	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	10683066	10683067	2
Insertion	Chr7	7179441	7179442	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2793731	2825112	LOC_Os11g05930
Inversion	Chr11	2793733	2825111	LOC_Os11g05930
Inversion	Chr5	12199567	12215686

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	211761	Chr3	6028369
Translocation	Chr11	211780	Chr3	6027946
Translocation	Chr5	5786938	Chr2	26506207	2
Translocation	Chr5	5786943	Chr2	26503041	LOC_Os05g10620
Translocation	Chr12	6215637	Chr2	1697550
Translocation	Chr11	14496442	Chr4	3486516
Translocation	Chr12	18686678	Chr5	13636098
Translocation	Chr11	19762904	Chr8	17299567	2
Translocation	Chr11	22512940	Chr5	12200166

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