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| Mutant Information |
|---|
| Mutant Name | FN2226-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2226-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12597107 | C-T | HET | ||
| SBS | Chr1 | 19466582 | T-G | HET | ||
| SBS | Chr1 | 20080707 | A-T | HET | ||
| SBS | Chr1 | 30432103 | G-A | Homo | ||
| SBS | Chr10 | 20968265 | A-G | HET | ||
| SBS | Chr11 | 24122225 | T-C | Homo | ||
| SBS | Chr11 | 25390326 | T-G | Homo | ||
| SBS | Chr12 | 2087830 | C-A | HET | ||
| SBS | Chr12 | 3541638 | T-A | Homo | ||
| SBS | Chr2 | 11454414 | A-G | HET | ||
| SBS | Chr2 | 11454420 | A-G | HET | ||
| SBS | Chr2 | 25952479 | A-C | HET | ||
| SBS | Chr2 | 27998613 | G-A | HET | ||
| SBS | Chr3 | 23966004 | G-A | HET | ||
| SBS | Chr3 | 32587270 | G-A | HET | ||
| SBS | Chr3 | 34951880 | C-T | HET | ||
| SBS | Chr4 | 13564858 | G-A | Homo | ||
| SBS | Chr4 | 14868582 | C-G | HET | ||
| SBS | Chr4 | 21983098 | T-A | Homo | ||
| SBS | Chr5 | 21735873 | G-C | HET | ||
| SBS | Chr5 | 28434589 | G-A | Homo | ||
| SBS | Chr5 | 818597 | A-T | HET | ||
| SBS | Chr5 | 8962216 | G-A | HET | ||
| SBS | Chr6 | 12524160 | A-T | HET | ||
| SBS | Chr6 | 20639543 | G-A | Homo | ||
| SBS | Chr6 | 4563298 | A-T | HET | ||
| SBS | Chr6 | 6137788 | C-G | HET | ||
| SBS | Chr7 | 27902658 | G-T | Homo | ||
| SBS | Chr7 | 27902659 | C-T | Homo | ||
| SBS | Chr8 | 13958274 | G-A | Homo | ||
| SBS | Chr8 | 24451454 | G-T | Homo | ||
| SBS | Chr9 | 1466532 | A-T | HET | ||
| SBS | Chr9 | 16905094 | A-T | Homo | ||
| SBS | Chr9 | 2501255 | T-C | HET | ||
| SBS | Chr9 | 3709046 | C-T | HET | ||
| SBS | Chr9 | 5466184 | A-G | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 789717 | 789725 | 8 | LOC_Os02g02370 |
| Deletion | Chr1 | 4625805 | 4625809 | 4 | |
| Deletion | Chr4 | 4702847 | 4702850 | 3 | |
| Deletion | Chr8 | 5514393 | 5514401 | 8 | LOC_Os08g09510 |
| Deletion | Chr12 | 8990874 | 8990881 | 7 | |
| Deletion | Chr6 | 9640049 | 9640055 | 6 | |
| Deletion | Chr7 | 11595602 | 11595612 | 10 | LOC_Os07g19560 |
| Deletion | Chr9 | 12709886 | 12709900 | 14 | |
| Deletion | Chr9 | 22204592 | 22204593 | 1 | |
| Deletion | Chr5 | 22349166 | 22349167 | 1 | |
| Deletion | Chr4 | 26679891 | 26679901 | 10 | |
| Deletion | Chr4 | 28480870 | 28480874 | 4 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 184498 | 184501 | 4 | |
| Insertion | Chr3 | 19259782 | 19259782 | 1 | |
| Insertion | Chr4 | 31847295 | 31847295 | 1 | |
| Insertion | Chr6 | 24058113 | 24058116 | 4 | |
| Insertion | Chr8 | 18424274 | 18424295 | 22 | LOC_Os08g29990 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 3139962 | 3672517 | 2 |
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 3802942 | Chr2 | 34492257 | |
| Translocation | Chr9 | 4757267 | Chr4 | 1178866 | |
| Translocation | Chr7 | 6094194 | Chr2 | 6633182 | |
| Translocation | Chr9 | 9372558 | Chr7 | 4204596 | |
| Translocation | Chr10 | 11115814 | Chr9 | 1610099 | |
| Translocation | Chr8 | 14737191 | Chr7 | 5214931 | |
| Translocation | Chr3 | 17412508 | Chr2 | 12501640 | LOC_Os03g30519 |
| Translocation | Chr3 | 17413881 | Chr2 | 12501636 | |
| Translocation | Chr5 | 18014804 | Chr2 | 11652224 | |
| Translocation | Chr7 | 18542637 | Chr4 | 17812240 | |
| Translocation | Chr11 | 19931472 | Chr4 | 16892855 | |
| Translocation | Chr12 | 27317308 | Chr11 | 15082110 |