Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16587120	T-A	Homo
SBS	Chr1	32294189	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g56090
SBS	Chr1	32294190	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g56090
SBS	Chr10	11084596	G-A	HET
SBS	Chr10	15534563	C-T	HET
SBS	Chr10	4234922	A-G	HET
SBS	Chr11	12788717	G-A	Homo	STOP_GAINED	LOC_Os11g22310
SBS	Chr11	16558318	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28640
SBS	Chr11	2086712	A-G	HET
SBS	Chr11	8514814	C-A	HET
SBS	Chr12	9137473	T-A	HET
SBS	Chr2	15075449	G-A	HET
SBS	Chr2	15261206	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25990
SBS	Chr2	2725768	C-A	Homo
SBS	Chr3	15867260	A-G	HET
SBS	Chr3	16141028	G-A	HET
SBS	Chr3	27054328	T-A	Homo
SBS	Chr3	35493662	C-T	HET
SBS	Chr4	12180628	T-A	HET
SBS	Chr4	15175876	C-T	HET
SBS	Chr4	20842292	T-G	Homo
SBS	Chr4	24519569	T-A	HET
SBS	Chr4	24571333	C-A	HET
SBS	Chr4	32922725	A-G	HET
SBS	Chr4	33793890	A-G	HET
SBS	Chr4	34518381	G-A	HET
SBS	Chr4	34563303	T-A	Homo
SBS	Chr5	11751620	G-C	Homo
SBS	Chr5	14997431	T-A	Homo
SBS	Chr5	709823	G-T	Homo
SBS	Chr6	12269191	A-C	HET
SBS	Chr6	27188926	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44950
SBS	Chr7	10483236	G-A	Homo
SBS	Chr7	10504379	C-G	HET
SBS	Chr7	18250523	C-T	HET
SBS	Chr7	26029261	T-G	HET
SBS	Chr8	22379708	G-C	Homo
SBS	Chr9	16400093	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26970

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	268510	268524	14
Deletion	Chr11	316001	345000	28999	3
Deletion	Chr10	1633001	1633022	21
Deletion	Chr11	2066928	2066931	3
Deletion	Chr11	2897995	2898002	7
Deletion	Chr11	4585338	4585348	10
Deletion	Chr6	5864833	5864837	4
Deletion	Chr12	7938354	7938366	12
Deletion	Chr9	11292305	11292312	7
Deletion	Chr5	13090143	13090144	1
Deletion	Chr4	13444435	13444437	2
Deletion	Chr1	14064466	14064473	7
Deletion	Chr12	14242788	14242789	1
Deletion	Chr7	18272395	18272397	2
Deletion	Chr3	19292449	19292451	2
Deletion	Chr10	19721612	19721618	6
Deletion	Chr4	21935306	21935319	13
Deletion	Chr7	27827175	27827188	13
Deletion	Chr1	35047385	35047386	1	LOC_Os01g60620
Deletion	Chr3	36129084	36129105	21

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35770112	35770113	2
Insertion	Chr10	12195523	12195524	2
Insertion	Chr10	278368	278376	9
Insertion	Chr2	8123411	8123413	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1733489	2403506	2
Inversion	Chr9	1733497	2403508	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	18177014	Chr8	17758094

Main menu