Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30863209	G-A	HET
SBS	Chr1	35320379	C-T	HET
SBS	Chr1	9171936	G-A	Homo
SBS	Chr10	10103431	T-C	HET
SBS	Chr10	22785591	T-A	HET
SBS	Chr10	5011031	G-A	HET
SBS	Chr10	559262	A-T	Homo
SBS	Chr11	13765408	G-A	Homo
SBS	Chr11	18749273	C-T	HET
SBS	Chr11	25395274	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42160
SBS	Chr12	14332932	G-T	HET
SBS	Chr12	16872203	C-T	HET
SBS	Chr12	17601624	G-C	HET
SBS	Chr12	18361775	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30570
SBS	Chr12	21172722	G-C	HET
SBS	Chr12	25139063	G-A	HET
SBS	Chr12	5210853	C-T	HET
SBS	Chr3	11385413	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g20150
SBS	Chr3	24353064	T-G	HET
SBS	Chr3	24690127	G-A	HET
SBS	Chr3	30933105	A-T	HET
SBS	Chr3	30933106	G-T	HET
SBS	Chr3	34650117	A-T	HET
SBS	Chr4	29316027	T-A	HET
SBS	Chr5	10142896	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17630
SBS	Chr5	3230253	C-G	HET
SBS	Chr5	4739461	C-T	HET
SBS	Chr5	6380585	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g11300
SBS	Chr6	24530134	A-G	Homo
SBS	Chr6	24530146	A-G	Homo
SBS	Chr7	11038583	G-T	HET
SBS	Chr8	23319689	C-A	Homo
SBS	Chr8	23319690	G-T	Homo
SBS	Chr9	1430418	C-A	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	57074	57075	1
Deletion	Chr8	3252296	3252297	1
Deletion	Chr3	5552962	5552963	1
Deletion	Chr7	6468001	6480000	11999	3
Deletion	Chr10	7145144	7145145	1
Deletion	Chr3	8273578	8273583	5	LOC_Os03g15140
Deletion	Chr1	9845963	9845966	3	LOC_Os01g17130
Deletion	Chr8	10714676	10714677	1
Deletion	Chr11	11380109	11380110	1
Deletion	Chr11	13679431	13679444	13
Deletion	Chr9	13803199	13803201	2
Deletion	Chr7	15520478	15520482	4
Deletion	Chr2	29863295	29863306	11	LOC_Os02g48790
Deletion	Chr4	30838203	30838211	8
Deletion	Chr2	30943608	30943610	2	LOC_Os02g50660
Deletion	Chr4	33032147	33032156	9
Deletion	Chr3	35198976	35198977	1	LOC_Os03g62120

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	16256193	16256193	1
Insertion	Chr3	12157517	12157518	2
Insertion	Chr4	15273890	15273890	1
Insertion	Chr8	12440724	12440724	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	18779328	18995479	2
Inversion	Chr11	18779397	18995481	2

Translocations: 16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2109665	Chr1	21587450	2
Translocation	Chr12	3253661	Chr8	17492499	2
Translocation	Chr7	6467886	Chr1	31599432	2
Translocation	Chr7	6468245	Chr1	31599436	2
Translocation	Chr9	7837398	Chr4	18954423
Translocation	Chr12	9725427	Chr4	7738319
Translocation	Chr7	10938008	Chr2	12124884
Translocation	Chr12	15876581	Chr2	16818007
Translocation	Chr8	16332128	Chr2	10454970	LOC_Os08g26850
Translocation	Chr8	18074325	Chr1	18737653	2
Translocation	Chr12	18179682	Chr11	10218699
Translocation	Chr6	20716597	Chr2	16763360
Translocation	Chr12	22702639	Chr11	20609792	LOC_Os12g37040
Translocation	Chr11	22899618	Chr8	18139720
Translocation	Chr7	24518290	Chr3	11232143	LOC_Os07g40986
Translocation	Chr11	26937061	Chr3	25230564

Main menu