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Mutant Information

Mutant Name	FN2237-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2237-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12954957	C-A	HET
SBS	Chr1	21197418	A-T	Homo
SBS	Chr10	21012618	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39390
SBS	Chr11	13242322	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g23030
SBS	Chr11	1449965	T-C	Homo
SBS	Chr11	9831681	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17630
SBS	Chr12	4011765	C-T	Homo
SBS	Chr2	15539422	C-T	Homo
SBS	Chr2	31961111	G-A	Homo
SBS	Chr3	14126949	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g24790
SBS	Chr3	17000270	C-T	HET
SBS	Chr3	27396714	A-G	Homo
SBS	Chr4	11787023	G-T	HET
SBS	Chr4	14331773	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g24870
SBS	Chr4	24823248	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g41880
SBS	Chr5	28552536	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g49770
SBS	Chr5	3673700	G-T	HET
SBS	Chr5	5021329	G-A	Homo
SBS	Chr6	13277261	T-C	HET
SBS	Chr6	20014917	G-A	HET
SBS	Chr6	22302757	G-T	HET
SBS	Chr7	23137334	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38500
SBS	Chr7	23635778	C-T	HET
SBS	Chr8	7107582	G-T	HET
SBS	Chr8	7839542	T-G	HET
SBS	Chr8	8104361	C-A	HET
SBS	Chr9	18161798	A-G	HET
SBS	Chr9	383901	G-A	HET
SBS	Chr9	9235777	G-C	HET

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	839001	849000	9999	3
Deletion	Chr11	1066001	1086000	19999	3
Deletion	Chr10	1676109	1676110	1
Deletion	Chr11	2204138	2204152	14
Deletion	Chr11	2304396	2304398	2	LOC_Os11g05210
Deletion	Chr7	5777464	5777466	2
Deletion	Chr2	6348001	6363000	14999
Deletion	Chr10	8162465	8162466	1
Deletion	Chr1	9495001	9511000	15999	2
Deletion	Chr5	9514456	9514457	1
Deletion	Chr3	10598876	10598879	3
Deletion	Chr7	11399001	11508000	108999	18
Deletion	Chr7	11894888	11894889	1
Deletion	Chr5	12131073	12131074	1
Deletion	Chr11	12157804	12157805	1
Deletion	Chr3	14250001	14262000	11999	4
Deletion	Chr1	14415001	14430000	14999	LOC_Os01g25450
Deletion	Chr6	15177261	15177262	1
Deletion	Chr10	15611003	15611016	13
Deletion	Chr6	16099001	16482000	382999	52
Deletion	Chr1	20070174	20070178	4	LOC_Os01g36250
Deletion	Chr10	22715383	22715384	1	LOC_Os10g42202
Deletion	Chr2	25063001	25074000	10999
Deletion	Chr1	25985389	25985391	2
Deletion	Chr1	41254001	41266000	11999	LOC_Os01g71300

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	16168603	16168603	1
Insertion	Chr11	13568674	13568674	1
Insertion	Chr12	15517904	15517905	2
Insertion	Chr4	15277970	15277970	1
Insertion	Chr5	12569228	12569233	6
Insertion	Chr5	5266970	5266971	2
Insertion	Chr5	8116387	8116387	1	LOC_Os05g14400
Insertion	Chr6	23088753	23088753	1
Insertion	Chr6	24860355	24860355	1
Insertion	Chr7	19566534	19566536	3
Insertion	Chr7	19805588	19805588	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr8	13369776	13388070
Inversion	Chr7	26255839	26325042
Inversion	Chr7	26255841	26325042

Translocations: 61

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	323086	Chr9	19136523
Translocation	Chr11	1079554	Chr4	27901262	LOC_Os11g03060
Translocation	Chr2	2071734	Chr1	1499653	2
Translocation	Chr7	2747363	Chr5	977048
Translocation	Chr12	3254092	Chr11	21096816	2
Translocation	Chr5	3559347	Chr1	16970414	2
Translocation	Chr12	3653304	Chr9	6641953
Translocation	Chr9	4897294	Chr3	25664335
Translocation	Chr10	5400582	Chr4	4112922
Translocation	Chr12	5444063	Chr8	18313473	2
Translocation	Chr8	6421955	Chr4	4142765	LOC_Os08g10890
Translocation	Chr8	6733753	Chr6	7387698
Translocation	Chr9	7057114	Chr1	31953044
Translocation	Chr9	8475144	Chr5	8030678	LOC_Os09g14340
Translocation	Chr7	8634759	Chr5	25568869
Translocation	Chr12	8840168	Chr4	15519175
Translocation	Chr7	8964219	Chr2	24244989
Translocation	Chr7	9387189	Chr4	20072514
Translocation	Chr12	9802829	Chr6	7521453
Translocation	Chr12	9879047	Chr10	327464
Translocation	Chr7	10511352	Chr3	23252800
Translocation	Chr11	10756223	Chr4	10128571	2
Translocation	Chr10	10976670	Chr7	10616997
Translocation	Chr4	11077435	Chr2	9471931	2
Translocation	Chr8	12109439	Chr2	9635747	LOC_Os08g20180
Translocation	Chr12	12473343	Chr9	5559644
Translocation	Chr8	12681634	Chr4	3703874
Translocation	Chr12	13410061	Chr11	19402555
Translocation	Chr11	13417995	Chr7	25288861	2
Translocation	Chr9	13766770	Chr7	26506258	2
Translocation	Chr3	14688079	Chr1	3012860
Translocation	Chr9	15007685	Chr1	12925732
Translocation	Chr8	15010874	Chr1	35935197
Translocation	Chr8	15027889	Chr7	11295944
Translocation	Chr11	15308619	Chr5	13400205
Translocation	Chr12	16035533	Chr11	10836180
Translocation	Chr7	16406627	Chr4	8718550
Translocation	Chr8	16926119	Chr7	8780954
Translocation	Chr5	17270318	Chr2	16769737
Translocation	Chr7	17538435	Chr1	15921850
Translocation	Chr11	17538825	Chr2	21868990	2
Translocation	Chr12	17844554	Chr8	11128004	2
Translocation	Chr8	17926589	Chr5	3407032	2
Translocation	Chr11	18279665	Chr3	29622495
Translocation	Chr8	18313584	Chr2	12312156	2
Translocation	Chr10	18597694	Chr3	6443121
Translocation	Chr11	18671688	Chr7	7595529	2
Translocation	Chr12	19387127	Chr5	3098478	2
Translocation	Chr8	20159612	Chr6	3357300	LOC_Os08g32540
Translocation	Chr8	20159704	Chr5	14039973	LOC_Os08g32540
Translocation	Chr4	20478524	Chr3	26496423
Translocation	Chr12	20844727	Chr3	1440032
Translocation	Chr11	22668463	Chr5	6411364
Translocation	Chr11	22808999	Chr8	24300511
Translocation	Chr7	22918207	Chr3	17572593	LOC_Os07g38210
Translocation	Chr12	23885099	Chr7	11509911
Translocation	Chr12	24881325	Chr5	14734731	2
Translocation	Chr12	27044721	Chr11	20669042
Translocation	Chr11	27688464	Chr5	23584155	2
Translocation	Chr11	27758119	Chr4	3130972
Translocation	Chr4	28213448	Chr1	31774263	LOC_Os04g47570

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