Search Results
| Mutant Information |
|---|
| Mutant Name | FN2239-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2239-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15567642 | G-T | HET | ||
| SBS | Chr1 | 15567643 | G-A | HET | ||
| SBS | Chr1 | 15567644 | G-A | HET | ||
| SBS | Chr2 | 28024685 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g45990 |
| SBS | Chr3 | 10983898 | A-T | Homo | ||
| SBS | Chr3 | 14686195 | C-T | HET | STOP_GAINED | LOC_Os03g25650 |
| SBS | Chr3 | 14747238 | A-G | HET | ||
| SBS | Chr3 | 23223454 | A-T | Homo | ||
| SBS | Chr4 | 9215283 | G-C | HET | ||
| SBS | Chr4 | 9256170 | T-A | Homo | SPLICE_SITE_DONOR | LOC_Os04g16924 |
| SBS | Chr4 | 17423502 | T-G | HET | ||
| SBS | Chr4 | 21774615 | T-G | Homo | ||
| SBS | Chr5 | 1711658 | A-T | HET | ||
| SBS | Chr5 | 19687507 | T-G | HET | ||
| SBS | Chr5 | 19690634 | T-A | HET | ||
| SBS | Chr5 | 21206381 | T-A | Homo | ||
| SBS | Chr5 | 24826273 | C-T | HET | ||
| SBS | Chr6 | 16009539 | G-A | HET | ||
| SBS | Chr6 | 20625197 | C-T | Homo | ||
| SBS | Chr7 | 11202939 | G-A | HET | ||
| SBS | Chr7 | 12950649 | T-A | HET | ||
| SBS | Chr8 | 19870781 | G-A | Homo | ||
| SBS | Chr8 | 20732525 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g33270 |
| SBS | Chr9 | 7382222 | G-A | Homo | ||
| SBS | Chr9 | 10428820 | G-A | HET | ||
| SBS | Chr9 | 22024980 | T-A | HET | ||
| SBS | Chr10 | 3064439 | G-A | HET | ||
| SBS | Chr10 | 5878207 | T-A | Homo | ||
| SBS | Chr10 | 9789669 | G-A | Homo | ||
| SBS | Chr10 | 12001228 | T-A | Homo | ||
| SBS | Chr10 | 14214759 | G-T | HET | ||
| SBS | Chr10 | 14214760 | A-T | HET | ||
| SBS | Chr11 | 2445518 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g05440 |
| SBS | Chr11 | 5502704 | C-T | HET | ||
| SBS | Chr11 | 17141996 | C-T | HET | ||
| SBS | Chr11 | 28986089 | C-T | HET | ||
| SBS | Chr12 | 15318386 | T-C | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1136047 | 1136050 | 3 | |
| Deletion | Chr12 | 2335196 | 2335205 | 9 | |
| Deletion | Chr11 | 10581001 | 10605000 | 23999 | 4 |
| Deletion | Chr3 | 11745244 | 11745255 | 11 | |
| Deletion | Chr11 | 11935952 | 11935953 | 1 | LOC_Os11g20590 |
| Deletion | Chr2 | 15795689 | 15795690 | 1 | |
| Deletion | Chr6 | 18388060 | 18388061 | 1 | |
| Deletion | Chr8 | 22958487 | 22958506 | 19 | |
| Deletion | Chr1 | 29650275 | 29650472 | 197 | |
| Deletion | Chr3 | 34088312 | 34088317 | 5 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 26072612 | 26072612 | 1 | LOC_Os03g46100 |
| Insertion | Chr7 | 20898552 | 20898552 | 1 | |
| Insertion | Chr8 | 5914608 | 5914627 | 20 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 1501993 | 1616353 | 2 |
| Inversion | Chr6 | 1501999 | 1616986 | 2 |
| Inversion | Chr11 | 9598391 | 10581871 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 27103851 | Chr1 | 21566812 | |
| Translocation | Chr11 | 27281481 | Chr10 | 17466724 |